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fix: use pigz-2.8
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Lines changed: 4 additions & 4 deletions
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@@ -1,9 +1,9 @@
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FROM debian:buster as prep
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WORKDIR /build
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RUN apt-get update && apt-get install -y make gcc zlib1g-dev wget unzip
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RUN wget https://zlib.net/pigz/pigz-2.7.tar.gz && \
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tar -xzvf pigz-2.7.tar.gz && \
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cd pigz-2.7 && \
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RUN wget https://zlib.net/pigz/pigz-2.8.tar.gz && \
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tar -xzvf pigz-2.8.tar.gz && \
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cd pigz-2.8 && \
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make
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RUN wget https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.9.zip && \
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unzip fastqc_v0.11.9.zip
@@ -16,7 +16,7 @@ FROM python:3.10-buster as base
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WORKDIR /app
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COPY --from=prep /build/bowtie2/* /usr/local/bin/
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COPY --from=prep /build/FastQC /opt/fastqc
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COPY --from=prep /build/pigz-2.7/pigz /usr/local/bin/pigz
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COPY --from=prep /build/pigz-2.8/pigz /usr/local/bin/pigz
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RUN chmod ugo+x /opt/fastqc/fastqc && \
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ln -fs /opt/fastqc/fastqc /usr/local/bin/fastqc && \
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for file in `ls /opt/hmmer/bin`; do ln -fs /opt/hmmer/bin/${file} /usr/local/bin/${file}; done

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