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upd seqstats sub-workflow
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main.nf

Lines changed: 3 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -2947,14 +2947,16 @@ workflow seqstats {
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// Input file with multiplexed reads (FASTQ.gz)
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ch_input = Channel.value(params.input)
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// Validate tags
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tag_validation(ch_barcodes)
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// Initial QC
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qc_se(ch_input)
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// Demultiplexing
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demux(
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qc_se.out.filtered,
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ch_barcodes)
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tag_validation.out.fasta)
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// Check primers
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primer_check(

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