diff --git a/BiomedicalDataScience_Syllabus.Rmd b/BiomedicalDataScience_Syllabus.Rmd index adb1289..d2dbae9 100644 --- a/BiomedicalDataScience_Syllabus.Rmd +++ b/BiomedicalDataScience_Syllabus.Rmd @@ -1,7 +1,9 @@ --- title: "High Throughput Biomedical Data Analysis" -date: Spring (April-June), 2024 -output: word_document +date: "Spring (April-June), 2024" +output: + pdf_document: default + word_document: default --- ```{r setup, include=FALSE} @@ -96,12 +98,12 @@ Violations of academic integrity will be treated in accordance with university p Sequencing data preprocessing and quality control (Week 1) * 4/22/24: Course introduction; Installation; Introduction to R -* 4/24/24: Essential tools for Data Science: Unix, GitHub, HPC +* 4/24/24: More Introduction to R, R Markdown, and Unix Sequencing data preprocessing and quality control (Week 2) -* 4/29/24: Data formats (.fasta, .fastq, .sam/.bam); FASTQC and multiQC -* 5/1/24: Sequence trimming and QC; alignment and wrangling +* 4/29/24: Introduction to Amarel and OARC +* 5/1/24: Introduction to Github; Introduction to FASTA and Other Sequencing Formats Genomics data analysis: mutation, linkage, and phylogenetics (Week 3) diff --git a/BiomedicalDataScience_Syllabus.pdf b/BiomedicalDataScience_Syllabus.pdf new file mode 100644 index 0000000..40e6f9e Binary files /dev/null and b/BiomedicalDataScience_Syllabus.pdf differ