build CPU benchmark during installation

Author: rafaelfsilva

MANIFEST.in

@@ -39,4 +39,6 @@ graft wfcommons/wfchef/recipes/blast/microstructures
 graft wfcommons/wfchef/recipes/blast
 graft wfcommons/wfchef/recipes/bwa/microstructures/**
 graft wfcommons/wfchef/recipes/bwa/microstructures
-graft wfcommons/wfchef/recipes/bwa
+graft wfcommons/wfchef/recipes/bwa
+include Makefile
+include bin/cpu-benchmark.cpp

Makefile

@@ -0,0 +1,40 @@
+# Makefile 
+
+objects = bin/cpu-benchmark.o
+CXX= g++
+CPPFLAGS= -std=c++11
+execname = bin/cpu-benchmark
+
+# compile
+$(execname): $(objects)
+	$(CXX) $(CPPFLAGS) -o $(execname) $(objects)
+
+#clean Makefile
+clean:
+	rm -rf $(objects) $(execname)
+
+
+# #define variables
+# objects= gpu-benchmark.o kernels.o 
+# NVCC= nvcc               #cuda c compiler
+# CPPFLAGS= -std=c++11
+# opt= -O2                 #optimization flag
+# LIBS=  
+# execname= gpu-benchmark
+
+# .PHONY: clean
+
+# #compile
+# $(execname): $(objects)
+# 	$(NVCC) $(CPPFLAGS) $(opt) -o $(execname) $(objects) $(LIBS) 
+
+# kernels.o: kernels.cu
+# 	$(NVCC) $(CPPFLAGS) $(opt)  -c kernels.cu
+# gpu-benchmark.o: gpu-benchmark.cu
+# 	$(NVCC) $(CPPFLAGS) $(opt)  -c gpu-benchmark.cu
+
+
+# #clean Makefile
+# clean:
+# 	rm $(objects)
+# #end of Makefile

README.md

@@ -11,15 +11,16 @@
 This Python package provides a collection of tools for:
 
 - Analyzing instances of actual workflow executions;
-- Producing recipes structures for creating workflow recipes for workflow generation; and
-- Generating synthetic realistic workflow instances.
+- Producing recipes structures for creating workflow recipes for workflow generation;
+- Generating synthetic realistic workflow instances; and
+- Generating realistic workflow benchmark specifications.
 
 [![Open In Gitpod](https://gitpod.io/button/open-in-gitpod.svg)](https://gitpod.io/#https://github.com/wfcommons/wfcommons/tree/feature/wfperf)
 
 ## Installation
 
 WfCommons is available on [PyPI](https://pypi.org/project/wfcommons).
-WfCommons requires Python3.6+ and has been tested on Linux and macOS.
+WfCommons requires Python3.7+ and has been tested on Linux and macOS.
 
 ### Installation using pip
 

bin/Makefile

@@ -1,14 +1,29 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-# Copyright (c) 2020-2021 The WfCommons Team.
+# Copyright (c) 2020-2023 The WfCommons Team.
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
 # the Free Software Foundation, either version 3 of the License, or
 # (at your option) any later version.
 
+import sys
+import subprocess
+
 from setuptools import setup, find_packages
+from setuptools.command.build_ext import build_ext
+
+
+class Build(build_ext):
+    """Customized setuptools build command - builds protos on build."""
+
+    def run(self):
+        protoc_command = ["make"]
+        if subprocess.call(protoc_command) != 0:
+            sys.exit(-1)
+        super().run()
+
 
 with open('README.md', 'r') as fh:
     long_description = fh.read()
@@ -28,6 +43,10 @@
     url='https://github.com/wfcommons/wfcommons',
     packages=find_packages(),
     include_package_data=True,
+    has_ext_modules=lambda: True,
+    cmdclass={
+        'build_ext': Build,
+    },
     install_requires=[
         'jsonschema',
         'matplotlib',
@@ -48,19 +67,21 @@
         'Programming Language :: Python :: 3.7',
         'Programming Language :: Python :: 3.8',
         'Programming Language :: Python :: 3.9',
-        'Programming Language :: Python :: 3.10',        
+        'Programming Language :: Python :: 3.10',
         'Intended Audience :: Developers',
         'Intended Audience :: Education',
         'Intended Audience :: Science/Research',
         'Natural Language :: English',
         'Topic :: Documentation :: Sphinx',
         'Topic :: System :: Distributed Computing'
     ],
-    python_requires='>=3.6',
+    python_requires='>=3.7',
+    data_files=[
+        ('bin', ['bin/cpu-benchmark'])
+    ],
     entry_points={
         'console_scripts': [
             'wfchef=wfcommons.wfchef.chef:main'
-
         ],
         'workflow_recipes': [
             'epigenomics_recipe = wfcommons.wfchef.recipes:EpigenomicsRecipe',