basal_constraints.yaml

compartment: e
compounds:
- id: cpd_na1
  lower: -1000
  upper: 1000
- id: cpd_pro-L
  cpd_name: L-Proline
  lower: 0
  upper: 1000
- id: cpd_h2o2
  cpd_name: Hydrogen Peroxide
  lower: 0
  upper: 1000
- id: cpd_damp
  cpd_name: dAMP
  lower: 0
  upper: 1000
- id: cpd_dcmp
  cpd_name: dCMP
  lower: 0
  upper: 1000
- id: cpd_dgmp
  cpd_name: dGMP
  lower: 0
  upper: 1000
- id: cpd_dtmp
  cpd_name: dTMP
  lower: 0
  upper: 1000
- id: cpd_met-L
  cpd_name: Methionine
  lower: 0
  upper: 1000
  sole_carbon_source: 'No'
- id: cpd_adn
  cpd_name: Adenosine
  lower: 0
  upper: 1000
  sole_carbon_source: 'No'
- id: cpd_dad-2
  cpd_name: Deoxyadneosine
  lower: 0
  upper: 1000
  sole_carbon_source: 'No'
- id: cpd_dgsn
  cpd_name: Deoxyguanosine
  lower: 0
  upper: 1000
  sole_carbon_source: 'No'
- id: cpd_glyc-R
  cpd_name: (R)-Glycerate
  lower: 0
  upper: 1000
  sole_carbon_source: 'No'
- id: cpd_indole
  cpd_name: Indole
  lower: 0
  upper: 1000
  sole_carbon_source: 'No'
- id: cpd_ura
  cpd_name: Uracil
  lower: 0
  upper: 1000
  sole_carbon_source: 'No'
- id: cpd_CrOH3
  cpd_name: Cr(OH)3
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_ac
  cpd_name: Acetate
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_acgam
  cpd_name: N-Acetyl-D-glucosamine
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_ala-D
  cpd_name: D-Alanine
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Amino Acid
- id: cpd_ala-L
  cpd_name: L-Alanine
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Amino Acid
- id: cpd_asp-L
  cpd_name: L-Aspartate
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Amino Acid
- id: cpd_bgl
  cpd_name: cellobiose
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_ca2
  cpd_name: Calcium
  lower: -1000
  upper: 1000
  sole_carbon_source: ''
  group: Small Molecule
- id: cpd_cl
  cpd_name: Chloride
  lower: -1000
  upper: 1000
  sole_carbon_source: ''
  group: Small Molecule
- id: cpd_co2
  cpd_name: CO2
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Small Molecule
- id: cpd_cobalt3
  lower: 0
  upper: 1000
- id: cpd_cobalt2
  cpd_name: Co2+
  lower: -1000
  upper: 1000
  sole_carbon_source: ''
  group: Small Molecule
- id: cpd_cro4
  cpd_name: chromate
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_cu2
  cpd_name: Cu2+
  lower: -1000
  upper: 1000
  sole_carbon_source: ''
  group: Small Molecule
- id: cpd_cytd
  cpd_name: Cytidine
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Nucleoside
- id: cpd_dcyt
  cpd_name: Deoxycytidine
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Nucleoside
- id: cpd_dms
  cpd_name: Dimethyl sulfide
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_dmso
  cpd_name: Dimethyl sulfoxide
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_dna
  cpd_name: DNA
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Nucleoside
- id: cpd_dodcan
  cpd_name: Dodecanoic acid (neutral)
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Fatty Acids
- id: cpd_duri
  cpd_name: Deoxyuridine
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Nucleoside
- id: cpd_fe2
  cpd_name: Fe2+
  lower: -1000
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_fe3
  cpd_name: Fe3+
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_for
  cpd_name: Formate
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_fum
  cpd_name: Fumarate
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_galactan
  cpd_name: Galactan
  lower: 0
  upper: 1000
  group: Carbon Source
- id: cpd_gal
  cpd_name: D-Galactose
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_glc-D
  cpd_name: D-Glucose
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_glu-L
  cpd_name: L-Glutamate
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Amino Acid
- id: cpd_gly
  cpd_name: Glycine
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Amino Acid
- id: cpd_gly-asp-L
  cpd_name: glycyl-L-aspartic acid
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Amino Acid
- id: cpd_gly-glu-L
  cpd_name: glycyl-L-glutamic acid
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Amino Acid
- id: cpd_glyc
  cpd_name: Glycerol
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_glyclt
  cpd_name: Glycolate
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_h
  cpd_name: H+
  lower: -1000
  upper: 1000
  sole_carbon_source: ''
  group: Small Molecule
- id: cpd_h2o
  cpd_name: H2O
  lower: -1000
  upper: 1000
  sole_carbon_source: ''
  group: Small Molecule
- id: cpd_h2s
  cpd_name: Hydrogen sulfide
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Small Molecule
- id: cpd_hdcan
  cpd_name: hexadecanoate (n-C16:0) (neutral)
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Fatty Acids
- id: cpd_ile-L
  cpd_name: L-Isoleucine
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Amino Acid
- id: cpd_k
  cpd_name: K+
  lower: -1000
  upper: 1000
  sole_carbon_source: ''
  group: Small Molecule
- id: cpd_lac-D
  cpd_name: D-Lactate
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_lac-L
  cpd_name: L-Lactate
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_lami
  cpd_name: laminarin
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_leu-L
  cpd_name: L-Leucine
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Amino Acid
- id: cpd_mal-L
  cpd_name: L-Malate
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_panose
  cpd_name: Panose
  lower: 0
  upper: 1000
  group: Carbon Source
- id: cpd_malt
  cpd_name: Maltose
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_malthp
  cpd_name: Maltoheptaose
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_malthx
  cpd_name: Maltohexaose
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_maltpt
  cpd_name: Maltopentaose
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_malttr
  cpd_name: Maltotriose
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_maltttr
  cpd_name: Maltotetraose
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_mg2
  cpd_name: Mg
  lower: -1000
  upper: 1000
  sole_carbon_source: ''
  group: Small Molecule
- id: cpd_mn2
  cpd_name: Mn2+
  lower: -1000
  upper: 1000
  sole_carbon_source: ''
  group: Small Molecule
- id: cpd_mn4o
  cpd_name: Manganese(IV) oxide
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_nh4
  cpd_name: Ammonia
  lower: -1000
  upper: 1000
  sole_carbon_source: ''
  group: Small Molecule
- id: cpd_no2
  cpd_name: Nitrite
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_no3
  cpd_name: Nitrate
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_o2
  cpd_name: O2
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_ocdcan
  cpd_name: octadecanoate (n-C18:0) (neutral)
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Fatty Acids
- id: cpd_pi
  cpd_name: Phosphate
  lower: -1000
  upper: 1000
  sole_carbon_source: ''
  group: Small Molecule
- id: cpd_pmcoa
  cpd_name: Pimeloyl-CoA
  lower: -1000
  upper: 1000
  sole_carbon_source: 'No'
  group: Carbon Source
- id: cpd_ptrc
  cpd_name: Putrescine
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_pyr
  cpd_name: Pyruvate
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_ser-L
  cpd_name: L-Serine
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Amino Acid
- id: cpd_so3
  cpd_name: Sulfite
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_so4
  cpd_name: Sulfate
  lower: -1000
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_succ
  cpd_name: Succinate
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Carbon Source
- id: cpd_thr-L
  cpd_name: L-Threonine
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Amino Acid
- id: cpd_tma
  cpd_name: Trimethylamine
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_tmao
  cpd_name: Trimethylamine N-oxide
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_tsul
  cpd_name: Thiosulfate
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_ttdcan
  cpd_name: tetradecanoate (C14:0) (neutral)
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Fatty Acids
- id: cpd_tttnt
  cpd_name: tetrathionate
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_tyr-L
  cpd_name: L-Tyrosine
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Amino Acid
- id: cpd_urdio
  cpd_name: Uranium dioxide
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_uri
  cpd_name: Uridine
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Nucleoside
- id: cpd_urnyl
  cpd_name: Uranyl
  lower: 0
  upper: 1000
  sole_carbon_source: ''
  group: Electron Acceptor
- id: cpd_val-L
  cpd_name: L-Valine
  lower: 0
  upper: 1000
  sole_carbon_source: 'Yes'
  group: Amino Acid
- id: cpd_thymd
  cpd_name: Thymidine
  lower: 0
  upper: 1000
- id: cpd_mobd
  cpd_name: Molybdate
  lower: -1000
  upper: 1000
- id: cpd_cbl1
  cpd_name: Cobalamin
  lower: -1000
  upper: 1000
- id: cpd_ppa
  cpd_name: propionate
  lower: 0
  upper: 1000
- id: cpd_urea
  cpd_name: Urea
  lower: 0
  upper: 1000
- id: cpd_chitin
  cpd_name: Chitin
  lower: 0
  upper: 1000
  sole_carbon_source: 'No'
- id: cpd_lys-L
  cpd_name: L-lysine
  lower: 0
  upper: 1000
  sole_carbon_source: 'No'
- id: cpd_trp-L
  cpd_name: tryptophan
  lower: 0
  upper: 1000
  sole_carbon_source: 'No'
- id: cpd_xan
  cpd_name: xanthine
  lower: 0
  upper: 1000
  sole_carbon_source: 'No'
- id: cpd_etoh
  cpd_name: ethanol
  lower: 0
  upper: 1000
- id: cpd_akg
  cpd_name: 2-oxoglutarate
  lower: 0
  upper: 1000
- id: cpd_gln-L
  cpd_name: Glutamine
  lower: 0
  upper: 1000
- id: cpd_asn-L
  cpd_name: Asparagine
  lower: 0
  upper: 1000
- id: cpd_ins
  cpd_name: inosine
  lower: 0
  upper: 1000
- id: cpd_thym
  cpd_name: Thymine
  lower: 0
  upper: 1000
- id: cpd_hxan
  cpd_names: hypoxanthine
  lower: 0
  upper: 1000