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lines changed Original file line number Diff line number Diff line change @@ -23,28 +23,30 @@ jobs:
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# set up conda
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- name : Setup conda
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+ with :
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+ # miniconda-version: 'latest'
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+ python-version : ' 3.10'
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- name : Install dependencies
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# install dependencies
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run : |
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conda env create -f OrthoIndex.yaml
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- - name : Activate
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- run : |
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- conda init bash
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- conda init
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- source /home/runner/.bashrc
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- cat ~/.bashrc
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- conda env list
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- conda --version
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- # - run: export PATH=/usr/share/miniconda/envs/OrthoIndex/bin:$PATH
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- source /usr/share//miniconda/etc/profile.d/conda.sh
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- ls -al /usr/share/miniconda/envs/OrthoIndex/bin
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- which python
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+ # - name: Activate
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+ # run: |
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+ # conda init bash
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+ # conda init
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+ # source /home/runner/.bashrc
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+ # cat ~/.bashrc
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+ # conda env list
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+ # conda --version
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+ # source /usr/share//miniconda/etc/profile.d/conda.sh
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+ # ls -al /usr/share/miniconda/envs/OrthoIndex/bin
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+ # which python
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# - run: conda activate OrthoIndex
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# - run: which python
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- - name : Install OrthoIndex
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+ - name : Install SOI
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# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
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run : |
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export PATH=/usr/share/miniconda/envs/OrthoIndex/bin:$PATH && python setup.py install
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conda env list
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conda env create -f OrthoIndex.yaml
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- - name : Install OrthoIndex
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+ - name : Install SOI
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# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
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run : |
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which python
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