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zhangrengang
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test CI: final5
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.github/workflows/main-linux.yml

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@@ -23,28 +23,30 @@ jobs:
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# set up conda
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- name: Setup conda
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uses: s-weigand/[email protected]
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with:
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# miniconda-version: 'latest'
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python-version: '3.10'
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- name: Install dependencies
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# install dependencies
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run: |
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conda env create -f OrthoIndex.yaml
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- name: Activate
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run: |
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conda init bash
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conda init
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source /home/runner/.bashrc
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cat ~/.bashrc
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conda env list
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conda --version
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# - run: export PATH=/usr/share/miniconda/envs/OrthoIndex/bin:$PATH
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source /usr/share//miniconda/etc/profile.d/conda.sh
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ls -al /usr/share/miniconda/envs/OrthoIndex/bin
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which python
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# - name: Activate
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# run: |
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# conda init bash
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# conda init
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# source /home/runner/.bashrc
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# cat ~/.bashrc
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# conda env list
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# conda --version
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# source /usr/share//miniconda/etc/profile.d/conda.sh
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# ls -al /usr/share/miniconda/envs/OrthoIndex/bin
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# which python
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# - run: conda activate OrthoIndex
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# - run: which python
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- name: Install OrthoIndex
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- name: Install SOI
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# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
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run: |
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export PATH=/usr/share/miniconda/envs/OrthoIndex/bin:$PATH && python setup.py install

.github/workflows/main-mac.yml

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@@ -34,7 +34,7 @@ jobs:
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conda env list
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conda env create -f OrthoIndex.yaml
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- name: Install OrthoIndex
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- name: Install SOI
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# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
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run: |
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which python

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