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  1. AStra AStra Public

    An analytical and visualization platform for rapid and easy comparison between different strains or between cell lines through aneuploidy spectrum analysis (Khalil et. al., Cancer Informatics, 2021)

    Python 7 2

  2. CNAtra CNAtra Public

    An analytical and visualization tool for hierarchical CNV discovery in low-coverage cancer genomes (Khalil et. al., BMC Bioinformatics, April 2020)

    MATLAB 2

  3. diffinvex diffinvex Public

    Computational framework for quantifying conditional selection in cancer

    R

  4. HiCNAtra HiCNAtra Public

    An analytical and visualization tool for CNV discovery and contact map correction of Hi-C/3C-seq data of cancer cell lines (Khalil et. al., BMC Bioinformatics, Nov 2020)

    MATLAB