I'm a research software engineer, genome biologist, and educator who helps researchers of all levels improve their computer science and data science skills.
- flexidot-bio/flexidot - Highly customizable, ambiguity-aware dotplots for visual sequence analyses (2 days ago)
- conda-forge/colormap-feedstock - A conda-smithy repository for colormap. (2 days ago)
- tanghaibao/jcvi - Python library to facilitate genome assembly, annotation, and comparative genomics (1 week ago)
- WEHI-Education/Workshop-intermediate-slurm - Intermedate Slurm Workshop source code using the Software Carpentry Workbench style. (3 weeks ago)
- WEHI-Education/Workshop-IntroToHPC-Slurm - RCP Training introducing HPC concepts and SLURM (3 weeks ago)
- flexidot-bio/flexidot (v2.0.1, 1 week ago) - Highly customizable, ambiguity-aware dotplots for visual sequence analyses
- Adamtaranto/mimeo (v1.2.1, 1 month ago) - Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
- Adamtaranto/TIRmite (v1.2.0, 1 month ago) - Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
- Adamtaranto/tSplit (v0.1.4, 1 month ago) - Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons.
- Adamtaranto/deRIP2 (v0.4.0, 2 months ago) - Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments.
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