Abaqus tutorial updates

A_Getting_started_anyscript/lesson1.md

@@ -95,7 +95,8 @@ model.
 You will notice "Todo:" comments inside the braces, to which we will return
 later.
 
-:::{note} The model objects that you create henceforth must be placed within the
+:::{note} 
+The model objects that you create henceforth must be placed within the
 "ArmModel" folder and should go between its pair of braces. 
 :::
 

AnyExp4SOLIDWORKS/index.md

@@ -3,6 +3,8 @@
 
 # Making Models using SOLIDWORKS
 
+(Making Models using SOLIDWORKS)=
+
 This tutorial shows how a CAD model designed in SOLIDWORKS can be
 imported into AnyBody and interact with the human model. This allows for
 analysis and optimization of the ergonomics of products.

Finite_element_analysis/Snippets/Lesson3/AbaqusInterface1.main.any

@@ -0,0 +1,103 @@
+//expect_errors = ["'<ObjectName>'", "Model loading skipped"]
+
+#include "libdef.any"
+
+Main = 
+{
+  // BodyModel configuration:
+  // Specify which limb segments to include, the type of muscles, joints, scaling etc
+  #include "Model/BodyModelConfiguration.any"
+
+  // Include the Human model from AMMR
+  #include "<ANYBODY_PATH_BODY>\HumanModel.any"
+
+  // Define desired posture or movement of the model
+  #include "Model\Mannequin.any"
+
+  // Compose the model used by the study
+  AnyFolder Model = 
+  {  
+     // Center of Mass (COM) position in the ground YZ plane
+     // COM balance driver can be excluded with:
+     // #define EXCLUDE_COM_BALANCE_DRIVERS
+     AnyVector CenterOfMassXZ = {0,0};
+
+     // Positioning of the right and left feet. 
+     // Ground-foot constraints can be excluded with:
+     // #define EXCLUDE_FOOT_CONSTRAINTS
+     Environment.GlobalRef.RightFootPrint = {
+        AnyVec3 HeelPosition = {-0.08, 0, 0.14};
+        AnyVec3 ToeDirection = {1, 0, 0.1}; 
+     };
+     Environment.GlobalRef.LeftFootPrint = {
+        AnyVec3 HeelPosition = {-0.08, 0, -0.14};
+        AnyVec3 ToeDirection = {1, 0, -0.1}; 
+     };
+
+    // Include the body part of the Human model
+    AnyFolder &BodyModel = .HumanModel.BodyModel;
+
+    // Include the default mannequin drivers
+    AnyFolder &DefaultMannequinDrivers = .HumanModel.DefaultMannequinDrivers;
+
+    // Environment files are used to include objects surrounding human,
+    // e.g. global reference frame
+    #include "Model\Environment.any"   
+
+    AnyFolder ModelEnvironmentConnection = 
+    {
+      // This file contains all contraints to simulate the standing human
+      #include "Model/JointsAndDrivers.any"
+
+      // Ground reaction force prediction
+      #include "Model/GRFPrediction.any"
+    };
+  };
+  // Define Study for running kinematics and inverse dynamics simulation analyses
+  //# BEGIN SNIPPET 1
+  AnyBodyStudy Study =
+  {
+    // Include the Model within the Study
+    AnyFolder &Model = .Model;  
+
+    §tEnd = 10.0;§
+    Gravity={0.0, -9.81, 0.0};
+    nStep = §5§;
+//# END SNIPPET 1
+
+//# BEGIN SNIPPET 2
+AnyMechOutputFileForceExport <ObjectName> = 
+{
+  FileName = "";
+  /*NumberFormat = 
+  {
+  Digits = 15;
+  Width = 23;
+  Style = ScientificNumber;
+  FormatStr = "";
+  };*/
+  //UseRefFrameOnOff = Off;
+  //AllSegmentsInStudyOnOff = Off;
+  //XMLformatOnOff = Off;
+  //RefFrame = Null;
+  //Segments = ;
+  //MeshRefFrames = ;
+  //ForceObjectExclude = ;
+  //ForceObjectList = ;
+  //AnyRefFrame &<Insert name0> = <Insert object reference (or full object definition)>;
+  //AnyRefFrame &<Insert name1> = <Insert object reference (or full object definition)>; You can make any number of AnyRefFrame objects!
+  //AnySeg &<Insert name0> = <Insert object reference (or full object definition)>;
+  //AnySeg &<Insert name1> = <Insert object reference (or full object definition)>; You can make any number of AnySeg objects!
+};
+//# END SNIPPET 2
+
+    // Overdeterminate solver is needed while using the 
+    // soft default mannequin drivers.
+    Kinematics.SolverType = KinSolOverDeterminate;
+    InitialConditions.SolverType = Kinematics.SolverType ;
+  };
+  // This is readymade simulation package including some pre-processing steps and the InverseDynamics analysis
+  #include "Model\RunAppSequence.any"
+
+}; //Main
+

Finite_element_analysis/Snippets/Lesson3/AbaqusInterface2.main.any

@@ -0,0 +1,96 @@
+#include "libdef.any"
+
+Main = 
+{
+  // BodyModel configuration:
+  // Specify which limb segments to include, the type of muscles, joints, scaling etc
+  #include "Model/BodyModelConfiguration.any"
+
+  // Include the Human model from AMMR
+  #include "<ANYBODY_PATH_BODY>\HumanModel.any"
+
+  // Define desired posture or movement of the model
+  #include "Model\Mannequin.any"
+
+  // Compose the model used by the study
+  AnyFolder Model = 
+  {  
+     // Center of Mass (COM) position in the ground YZ plane
+     // COM balance driver can be excluded with:
+     // #define EXCLUDE_COM_BALANCE_DRIVERS
+     AnyVector CenterOfMassXZ = {0,0};
+
+     // Positioning of the right and left feet. 
+     // Ground-foot constraints can be excluded with:
+     // #define EXCLUDE_FOOT_CONSTRAINTS
+     Environment.GlobalRef.RightFootPrint = {
+        AnyVec3 HeelPosition = {-0.08, 0, 0.14};
+        AnyVec3 ToeDirection = {1, 0, 0.1}; 
+     };
+     Environment.GlobalRef.LeftFootPrint = {
+        AnyVec3 HeelPosition = {-0.08, 0, -0.14};
+        AnyVec3 ToeDirection = {1, 0, -0.1}; 
+     };
+
+    // Include the body part of the Human model
+    AnyFolder &BodyModel = .HumanModel.BodyModel;
+
+    // Include the default mannequin drivers
+    AnyFolder &DefaultMannequinDrivers = .HumanModel.DefaultMannequinDrivers;
+
+    // Environment files are used to include objects surrounding human,
+    // e.g. global reference frame
+    #include "Model\Environment.any"   
+
+    AnyFolder ModelEnvironmentConnection = 
+    {
+      // This file contains all contraints to simulate the standing human
+      #include "Model/JointsAndDrivers.any"
+
+      // Ground reaction force prediction
+      #include "Model/GRFPrediction.any"
+    };
+  };
+  // Define Study for running kinematics and inverse dynamics simulation analyses
+  AnyBodyStudy Study =
+  {
+    // Include the Model within the Study
+    AnyFolder &Model = .Model;  
+
+    §tEnd = 10.0;§
+    Gravity={0.0, -9.81, 0.0};
+    nStep = §5§;
+
+//# BEGIN SNIPPET 1
+AnyMechOutputFileForceExport §FE_out§ =
+{
+  §FileName = "files_in/clavload.xml";
+  UseRefFrameOnOff = On;
+  RefFrame = &Main.HumanModel.BodyModel.Right.ShoulderArm.Seg.Clavicula.localrefframe;
+  AllSegmentsInStudyOnOff = Off;
+  XMLformatOnOff = On;
+  Segments = {&Main.HumanModel.BodyModel.Right.ShoulderArm.Seg.Clavicula};
+  MeshRefFrames = {&Main.HumanModel.BodyModel.Right.ShoulderArm.Seg.Clavicula.localrefframe};§
+};
+//# END SNIPPET 1
+
+    // Overdeterminate solver is needed while using the 
+    // soft default mannequin drivers.
+    Kinematics.SolverType = KinSolOverDeterminate;
+    InitialConditions.SolverType = Kinematics.SolverType ;
+//# BEGIN SNIPPET 2
+}; // END of Study
+
+§AnyOperationShellExec ConvertToAbq={
+  Show=On;
+  FileName = "AnyFE2Abq.exe";
+  Arguments = "-i .\files_in\clavload.xml -o .\files_out\output.inp -m .\clavicula.inp";
+  WorkDir=".\ ";
+};§  
+//# END SNIPPET 2
+
+  // This is readymade simulation package including some pre-processing steps and the InverseDynamics analysis
+  #include "Model\RunAppSequence.any"
+
+}; //Main
+

Finite_element_analysis/Snippets/Lesson3/Model/BodyModelConfiguration.any

@@ -0,0 +1,24 @@
+#path __BM_PLUGIN_FILE__ "BodyModelConfiguration.any"
+#define BM_CONFIG_PLUGIN __BM_PLUGIN_FILE__
+
+// -----------------------------------------------------------------------------------
+// The BodyModel configuration can be modified using BodyModel GUI plugin
+// or by manually editing this file.
+//
+// Please see this this file for more information on the options:
+// #path HTML_DOC "<AMMR_PATH_DOC>/bm_config/index.html"
+// -----------------------------------------------------------------------------------
+
+#define BM_MANNEQUIN_DRIVER_DEFAULT ON
+
+// Enable the TLEM2 lower extremity model
+#define BM_LEG_MODEL _LEG_MODEL_TLEM2_
+
+//# BEGIN SNIPPET 1
+// Switch off all muscles of the body model
+§#define BM_LEG_MUSCLES_BOTH _MUSCLES_NONE_
+#define BM_TRUNK_MUSCLES _MUSCLES_NONE_§
+
+// Excluding the left arm segments
+§#define BM_ARM_LEFT OFF§
+//# END SNIPPET 1

Finite_element_analysis/Snippets/Lesson3/Model/DrawSettings.any

@@ -0,0 +1,149 @@
+
+DrawSettings ={
+
+
+  //This is the color definitions of the nodes and segments
+ Colors = {
+  AnyBodyRed = {149/256,51/256,55/256};    //AnyBody standard red
+  AnyBodyGreen = {47/256,131/256,80/256};  //AnyBody standard green
+  AnyBodyBlue = {82/256,85/256,111/256};   //AnyBody standard blue
+  AnyBodyYellow= {235/256,197/256,17/256}; //AnyBody standard yellow
+  AnyBodyPaleYellow = {248/256,204/256,115/256}; //AnyBody standard pale yellow
+AnyBodyGrey = {153/256,153/256,153/256};    //AnyBody standard grey
+
+  Nodes = AnyBodyPaleYellow; 
+  Segments =  AnyBodyPaleYellow; 
+};
+
+  Muscle ={ 
+    RGB = .Colors.AnyBodyRed;
+    Visible =On;
+    DrawScaleOnOff =Off;
+    Bulging =0.0;
+    ColorScale =1.0;
+    RGBColorScale = {0.957031, 0.785156, 0.785156};
+    MaxStress = 2500000.000000; //N/m^2 //This number is for graphics only!
+    Opacity =1.0;
+    DrawScale = 
+    {
+      EnableCreasing = Off;
+      CreasingAngle = 0.524;
+      EnableWireframe = Off;
+      EnableSmoothing = On;
+      Param = 0.0;
+      ParamArray = {0.0, 0.167, 0.333, 0.5, 0.667, 0.833, 1.0};
+      RGBArray = {{0.0, 0.0, 0.6}, {0.0, 0.0, 1.0}, {0.0, 1.0, 1.0}, {0.0, 1.0, 0.0}, {1.0, 1.0, 0.0}, {1.0, 0.0, 0.0}, {0.6, 0.0, 0.0}};
+      OpacityArray = {1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0};
+    };
+  }; 
+
+
+    BonesOpacity ={
+
+    GlobalCoef = 1;
+
+    Skull = 1*GlobalCoef;
+    Thorax = 1*GlobalCoef;
+    Pelvis = 1*GlobalCoef;
+    Sacrum = 1*GlobalCoef;
+    L5 = 1*GlobalCoef;
+    L4 = 1*GlobalCoef;
+    L3 = 1*GlobalCoef;
+    L2 = 1*GlobalCoef;
+    L1 = 1*GlobalCoef;
+
+    RightFoot = 1*GlobalCoef;
+    RightShank = 1*GlobalCoef;
+    RightThigh = 1*GlobalCoef;
+
+    LeftFoot = 1*GlobalCoef;
+    LeftShank = 1*GlobalCoef;
+    LeftThigh = 1*GlobalCoef;
+
+
+    RightClavicula = 1*GlobalCoef;
+    RightScapula = 1*GlobalCoef;
+    RightHumerus = 1*GlobalCoef;
+    RightUlna = 1*GlobalCoef;
+    RightRadius = 1*GlobalCoef;
+    RightHand = 1*GlobalCoef;
+
+    LeftClavicula = 1*GlobalCoef;
+    LeftScapula = 1*GlobalCoef;
+    LeftHumerus = 1*GlobalCoef;
+    LeftUlna = 1*GlobalCoef;
+    LeftRadius = 1*GlobalCoef;
+    LeftHand = 1*GlobalCoef;
+
+
+    // For leg TD only.
+    RightTalus = 1*GlobalCoef;
+    RightPatella = 1*GlobalCoef;
+
+    LeftTalus = 1*GlobalCoef;
+    LeftPatella = 1*GlobalCoef;
+
+
+    // For detailed cervical model only.
+    C1 = 1*GlobalCoef;
+    C2 = 1*GlobalCoef;
+    C3 = 1*GlobalCoef;
+    C4 = 1*GlobalCoef;
+    C5 = 1*GlobalCoef;
+    C6 = 1*GlobalCoef;
+    C7 = 1*GlobalCoef;
+  };
+
+
+
+  SegmentAxes ={
+    RGB ={0,0,1};
+    ScaleXYZ ={0.0001,0.00001,0.00001};
+  };
+  BML ={
+    ScaleXYZ ={0.0006,0.0006,0.0006};
+    RGB = .Colors.AnyBodyBlue;
+  };
+  JointAxesProximal = {
+    RGB = .Colors.AnyBodyRed;
+    ScaleXYZ = {0.015,0.015,0.015};
+  };
+  JointAxesDistal = {
+    RGB = .Colors.AnyBodyGreen;
+    ScaleXYZ = {0.01,0.01,0.01};
+  };
+
+
+  SegmentNodes ={
+    ScaleXYZ ={0.0005,0.0005,0.0005};
+    RGB = .Colors.AnyBodyRed;
+  };
+  WrapGeometry ={
+    RGB ={1,1,1};
+  };
+
+     DrawSettingsSupport={
+    Lin={ 
+        ScaleFactor=0.004; 
+       RGB = {0,0,1};
+      Thickness = 0.004;
+      HeadThickness = 2*Thickness;
+      HeadLength = 3*Thickness;
+    };
+    Rot={ 
+       ScaleFactor=0.08; 
+      RGB = {1,0,0};
+       Thickness = 0.075;
+       HeadThickness = 2*Thickness;
+       HeadLength = 5*Thickness;
+    };
+  };
+
+
+  Marker={
+  Color={0,0,1};
+  Radius=0.00;
+
+  };
+
+}; //DrawSettings