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Arc Research Institute

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  1. evo2 evo2 Public

    Genome modeling and design across all domains of life

    Jupyter Notebook 2.7k 280

  2. arc-virtual-cell-atlas arc-virtual-cell-atlas Public

    Arc Virtual Cell Atlas

    Jupyter Notebook 258 23

  3. SRAgent SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    Python 69 11

  4. binseq binseq Public

    A high efficiency binary format for sequencing data

    Rust 30 2

  5. ScreenPro2 ScreenPro2 Public

    Flexible analysis of high-content CRISPR screening

    Python 29 6

  6. scRecounter scRecounter Public

    Nextflow pipeline to re-process all public single-cell RNA-seq data

    Jupyter Notebook 13 2

Repositories

Showing 10 of 18 repositories
  • bqtools Public

    A command line utilty for working with BINSEQ files

    Rust 11 0 3 0 Updated Apr 21, 2025
  • vbinseq Public

    An extension of BINSEQ to handle variable-length records

    Rust 6 0 0 0 Updated Apr 21, 2025
  • evo2 Public

    Genome modeling and design across all domains of life

    Jupyter Notebook 2,698 Apache-2.0 280 20 3 Updated Apr 21, 2025
  • scRecounter Public

    Nextflow pipeline to re-process all public single-cell RNA-seq data

    Jupyter Notebook 13 MIT 2 0 0 Updated Apr 12, 2025
  • SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    Python 69 MIT 11 1 0 Updated Apr 10, 2025
  • mmr Public

    A minimap2 implementation with binseq inputs

    Rust 8 0 0 0 Updated Apr 8, 2025
  • binseq Public

    A high efficiency binary format for sequencing data

    Rust 30 2 2 0 Updated Apr 8, 2025
  • binseq-bindings Public

    C-Bindings to the BINSEQ library

    Rust 0 0 0 0 Updated Apr 8, 2025
  • kmer-count Public

    A simple utility used to count kmers

    Rust 0 0 0 0 Updated Apr 8, 2025
  • ScreenPro2 Public

    Flexible analysis of high-content CRISPR screening

    Python 29 6 12 (2 issues need help) 0 Updated Apr 7, 2025
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