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List of to do's (from .._anova.cpp): 1. Fix "main_model = "Free"". 2. Use "index" to vary updates to pairwise effects. 3. Add between model moves. 4. Add g prior. 5. Output for ``save''.
List of to do's (from _anova.cpp) 1. Use "index" to vary updates to pairwise effects. 2. Add between model moves. 3. Add g prior. 4. Output on ``save''
* bgmCompare; function documentation, output handling * utility_functions; helper functions for data checks and output handling * gibbs_..._anova.cpp; save options, dynamic declaration of output
Implemented RcppArmadillo for more efficient memory management in bgmCompare().
* Added full-conditional for the selection of category threshold differences for regular ordinal variables. * Small performance improvement print.bgms: * Update to variable name changes.
…g code can be used to compare new to old code.
a = Wenchuan[1:50,1:5] - 1
b = Wenchuan[151:200,1:5] - 1
a = na.omit(a)
b = na.omit(b)
a[a[,1]==3,1] = 2
xx = rbind(a,b)
group = as.vector(c(rep(1, nrow(a)), rep(2, nrow(b))))
t = bgmCompare_dev(x = a, y = b,
t.test = TRUE,
main_difference_model = "Collapse",
difference_selection = FALSE,
save = FALSE)
an = bgmCompare(x = xx,
g = group,
main_difference_model = "Collapse",
difference_selection = FALSE,
save = FALSE)
par(mfrow = c(2,2))
plot(t$posterior_mean_pairwise[,1], an$posterior_mean_pairwise[,1]); abline(0,1)
plot(t$posterior_mean_pairwise[,2], an$posterior_mean_pairwise[,2]); abline(0,1)
if("posterior_mean_indicator" %in% names(t)) {
plot(t$posterior_mean_main, an$posterior_mean_main); abline(0,1)
plot(t$posterior_mean_indicator, an$posterior_mean_indicator,
xlim = c(0,1), ylim = c(0,1)); abline(0,1)
} else {
plot(t$posterior_mean_main[,1], an$posterior_mean_main[,1]); abline(0,1)
plot(t$posterior_mean_main[,2], an$posterior_mean_main[,2]); abline(0,1)
}
Clean-up utility functions.
Fixed a parameter issue in bgmCompare
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@vandenman Heb jij een idee waarom de Windows check faalt? |
Collaborator
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Heb je geprobeerd een Makevars.win te maken zoals hier? Die skeleton functie van rcpparmadillo zou dat ook maken, maar wel vreemd dat je er op de andere platforms geen nodig hebt. |
Collaborator
Author
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Ja check, dat had ik geprobeerd idd. Maar dan zowel src/Makevars en src/Makevars.win<http://makevars.win/>, en dan compileert het niet voor de Mac. Nu los met Makevars.win wel, en nu lijken de checks ook goed te gaan! Thanks! :-)
On 3 Feb 2025, at 20:41, Don van den Bergh ***@***.***> wrote:
Heb je geprobeerd een Makevars.win te maken zoals hier<https://stackoverflow.com/a/39125546/4917834>? Die skeleton functie van rcpparmadillo zou dat ook maken, maar wel vreemd dat je er op de andere platforms geen nodig hebt.
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This is a major update to bgmCompare, which now allows for the comparison for two or more groups.