skip obs that error

[dannda]

Description

catch and skip obs that error

Type of change

• Documentation (non-breaking change that adds or improves the documentation)
• New feature (non-breaking change which adds functionality)
• Optimization (non-breaking, back-end change that speeds up the code)
• Bug fix (non-breaking change which fixes an issue)
• Breaking change (whatever its nature)

Checklist

• All tests pass (eg. npm test)
• Pre-commit hooks run successfully (eg. pre-commit run --all-files)

[will-moore]

The code changes look good, but I don't know how to test. Is there some sample data somewhere that I could use?

[davehorsfall]

LGTM

[davehorsfall]

Can view this component with:

• http://localhost:5173/?source=https://haniffa.cog.sanger.ac.uk/skin-fibroblast/xenium/0.5.2/skin-fibroblast-Public_cutaneousmelanoma-raw.zarr&isLabel=0&anndata=&modelMatrix=&source=https://haniffa.cog.sanger.ac.uk/skin-fibroblast/xenium/0.5.2/skin-fibroblast-Public_cutaneousmelanoma-label.zarr&isLabel=1&modelMatrix=%5B1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1%5D&anndata=https://haniffa.cog.sanger.ac.uk/skin-fibroblast/xenium/0.5.2/skin-fibroblast-Public_cutaneousmelanoma-anndata.zarr
• http://localhost:5173/?source=https://haniffa.cog.sanger.ac.uk/ctcl/visium/skin-multimodal/0.5.2/skin-WS_D_SKNsp10264994-raw.zarr&isLabel=0&anndata=&modelMatrix=&source=https://haniffa.cog.sanger.ac.uk/ctcl/visium/skin-multimodal/0.5.2/reindexed-skin-WS_D_SKNsp10264994-label.ome.zarr&isLabel=1&modelMatrix=%5B1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1%5D&anndata=https://haniffa.cog.sanger.ac.uk/ctcl/visium/skin-multimodal/0.5.2/intersect-reindexed-concat-skin-WS_D_SKNsp10264994-anndata.zarr

Although these don't trigger an error.

Would be good to merge this, so the fix is ported across to Vizarr.

[will-moore]

@davehorsfall Thanks for the links. Unfortunately they are both giving me a bunch of errors like:

Viewer.jsx:102 Uncaught TypeError: Cannot read properties of undefined (reading '0')
    at Viewer.jsx:102:35
    at Array.map (<anonymous>)
    at Viewer.jsx:89:8
    at updateMemo (react-dom.development.js:16427:19)