Laboratory materials for the Bressanone course
Labs are organized by topic, using only a short identifier
- Intro to R and Bioconductor -
intro-to-r-bioc - Intro to Quarto -
quarto-intro
- Bulk RNA-seq analysis -
bulk-rnaseq - Single cell RNA-seq analysis -
single-cell-rnaseq - Advanced single-cell RNA-seq analysis
single-cell-rnaseq - Bulk ATAC-seq analysis -
bulk-atacseq
- Mass spectrometry-based proteomics
- End-to-end metabolomics workflow
- Multi-condition single cell RNA-seq differential analysis
- Intro to Tidyomics: tidy data analysis applied to omics data
- Spatial transcriptomics
- Trajectory analysis with slingshot and tradeSeq
- Interactive exploration with iSEE
- Working with Image Data
A pre-commit hook will help prevent adding of large (>10MB) files to the repository.
After cloning this repository, run the following command to set up the git hook to error on an attempted commit of large files.
./scripts/install-hooks.sh