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Added a new benchmark for iterating columns
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Francesc Alted
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May 4, 2015
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from __future__ import print_function | ||
import contextlib, time | ||
import bcolz, numpy | ||
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@contextlib.contextmanager | ||
def ctime(label=""): | ||
"Counts the time spent in some context" | ||
t = time.time() | ||
yield | ||
print(label, round(time.time() - t, 3), "sec") | ||
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N = 1000 * 1000 | ||
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ct = bcolz.fromiter(((i, i*i, i*i*i) for i in xrange(N)), dtype='i8,i8,i8', count=N) | ||
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b = numpy.array(numpy.arange(N) % 2, dtype="bool") | ||
c = bcolz.carray(b) | ||
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sorted_index = range(1, N, 2) | ||
with ctime(): | ||
r0 = (ct['f0'][sorted_index]).tolist() | ||
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with ctime(): | ||
r1 = [x.f0 for x in ct.where(b)] | ||
assert r0 == r1 | ||
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with ctime(): | ||
r2 = [x.f0 for x in ct.where(c)] | ||
assert r0 == r2 | ||
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with ctime(): | ||
r3 = [x for x in ct['f0'].where(b)] | ||
assert r0 == r3 | ||
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with ctime(): | ||
r4 = [x for x in ct['f0'].where(c)] | ||
assert r0 == r4 | ||
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# sum | ||
with ctime("sum list"): | ||
r5 = sum([x for x in ct['f0'].where(c)]) | ||
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with ctime("sum generator"): | ||
r6 = sum(x for x in ct['f0'].where(c)) | ||
assert r5 == r6 | ||
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with ctime("sum method"): | ||
r7 = bcolz.fromiter((x for x in ct['f0'].where(c)), | ||
dtype=ct['f0'].dtype, | ||
count=c.wheretrue().sum()).sum() | ||
assert r7 == r5 | ||
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# sum with no NA's | ||
with ctime("sum with no NA (list)"): | ||
r8 = sum([x for x in ct['f0'].where(c) if x == x]) # x==x check to leave out NA values | ||
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# sum with no NA's | ||
with ctime("sum with no NA (generator)"): | ||
r9 = sum((x for x in ct['f0'].where(c) if x == x)) # x==x check to leave out NA values |