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3 changes: 3 additions & 0 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -63,3 +63,6 @@ QUICKSTART_STARTUP_SCRIPT.md
# OS files
.DS_Store
Thumbs.db

# Robust
.git/
8 changes: 8 additions & 0 deletions .pre-commit-config.yaml
Original file line number Diff line number Diff line change
@@ -1,4 +1,12 @@
repos:
- repo: local
hooks:
- id: shredguard-check
name: shredguard check
entry: shredguard check
language: system
types: [text]

- repo: https://github.com/astral-sh/ruff-pre-commit
rev: v0.14.10
hooks:
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35 changes: 28 additions & 7 deletions README.md
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Expand Up @@ -3,17 +3,37 @@
</p>

<p align="center">
<a href="https://github.com/BrainBehaviorAnalyticsLab/PyPLLR_GUI/releases/latest"><img src="https://img.shields.io/github/v/release/BrainBehaviorAnalyticsLab/PyPLLR_GUI?label=Release&style=flat-square" alt="Release"></a>
<a href="https://github.com/BrainBehaviorAnalyticsLab/PyPLLR_GUI/releases"><img src="https://img.shields.io/github/downloads/BrainBehaviorAnalyticsLab/PyPLLR_GUI/total?style=flat-square" alt="Downloads"></a>
<a href="https://github.com/BrainBehaviorAnalyticsLab/PyPLLR_GUI/releases/latest">
<img src="https://img.shields.io/github/v/release/BrainBehaviorAnalyticsLab/PyPLLR_GUI?label=Release&style=flat-square" alt="Release">
</a>
<a href="https://github.com/BrainBehaviorAnalyticsLab/PyPLLR_GUI/releases">
<img src="https://img.shields.io/github/downloads/BrainBehaviorAnalyticsLab/PyPLLR_GUI/total?style=flat-square" alt="Downloads">
</a>
<img src="./assets/coverage.svg" alt="Coverage">
</p>

<p align="center">
<a href="https://github.com/BrainBehaviorAnalyticsLab/PyPLLR_GUI/actions/workflows/tests-ubuntu.yml"><img src="https://img.shields.io/github/actions/workflow/status/BrainBehaviorAnalyticsLab/PyPLLR_GUI/tests-ubuntu.yml?branch=main&label=Ubuntu&logo=ubuntu&style=flat-square" alt="Ubuntu Tests"></a>
<a href="https://github.com/BrainBehaviorAnalyticsLab/PyPLLR_GUI/actions/workflows/tests-macos.yml"><img src="https://img.shields.io/github/actions/workflow/status/BrainBehaviorAnalyticsLab/PyPLLR_GUI/tests-macos.yml?branch=main&label=macOS&logo=apple&style=flat-square" alt="macOS Tests"></a>
<a href="https://github.com/BrainBehaviorAnalyticsLab/PyPLLR_GUI/actions/workflows/tests-windows.yml"><img src="https://img.shields.io/github/actions/workflow/status/BrainBehaviorAnalyticsLab/PyPLLR_GUI/tests-windows.yml?branch=main&label=Windows&logo=windows&style=flat-square" alt="Windows Tests"></a>
<a href="https://github.com/BrainBehaviorAnalyticsLab/PyPLLR_GUI/actions/workflows/code-quality.yml"><img src="https://img.shields.io/github/actions/workflow/status/BrainBehaviorAnalyticsLab/PyPLLR_GUI/code-quality.yml?branch=main&label=Code%20Quality&style=flat-square" alt="Code Quality"></a>
<a href="https://voxkit.atlassian.net/jira/software/projects/VOX/boards/2/"><img src="https://img.shields.io/badge/Project-Jira-0052CC?logo=jira&style=flat-square" alt="Jira"></a>
<a href="https://github.com/WISCLab/shred-guard">
<img src="https://img.shields.io/badge/SHREDGUARD-Configured-06B6D4?style=for-the-badge&logo=git&logoColor=white" alt="ShredGuard">
</a>
</p>

<p align="center">
<a href="https://github.com/BrainBehaviorAnalyticsLab/PyPLLR_GUI/actions/workflows/tests-ubuntu.yml">
<img src="https://img.shields.io/github/actions/workflow/status/BrainBehaviorAnalyticsLab/PyPLLR_GUI/tests-ubuntu.yml?branch=main&label=Ubuntu&logo=ubuntu&style=flat-square" alt="Ubuntu Tests">
</a>
<a href="https://github.com/BrainBehaviorAnalyticsLab/PyPLLR_GUI/actions/workflows/tests-macos.yml">
<img src="https://img.shields.io/github/actions/workflow/status/BrainBehaviorAnalyticsLab/PyPLLR_GUI/tests-macos.yml?branch=main&label=macOS&logo=apple&style=flat-square" alt="macOS Tests">
</a>
<a href="https://github.com/BrainBehaviorAnalyticsLab/PyPLLR_GUI/actions/workflows/tests-windows.yml">
<img src="https://img.shields.io/github/actions/workflow/status/BrainBehaviorAnalyticsLab/PyPLLR_GUI/tests-windows.yml?branch=main&label=Windows&logo=windows&style=flat-square" alt="Windows Tests">
</a>
<a href="https://github.com/BrainBehaviorAnalyticsLab/PyPLLR_GUI/actions/workflows/code-quality.yml">
<img src="https://img.shields.io/github/actions/workflow/status/BrainBehaviorAnalyticsLab/PyPLLR_GUI/code-quality.yml?branch=main&label=Code%20Quality&style=flat-square" alt="Code Quality">
</a>
<a href="https://voxkit.atlassian.net/jira/software/projects/VOX/boards/2/">
<img src="https://img.shields.io/badge/Project-Jira-0052CC?logo=jira&style=flat-square" alt="Jira">
</a>
</p>

> [!IMPORTANT]
Expand All @@ -27,6 +47,7 @@

## Project Structure


```
src/voxkit/
├── gui/ # PyQt6 interface (pages, components, workers)
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11 changes: 11 additions & 0 deletions pyproject.toml
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Expand Up @@ -44,6 +44,7 @@ dev = [
"types-PyYAML>=6.0.0",
"genbadge[coverage]>=1.1.3",
"invoke>=2.2.0",
"shred-guard>=1.1.0",
]
docs = [
"pdoc>=16.0.0",
Expand Down Expand Up @@ -204,3 +205,13 @@ where = ["src"]

[tool.uv.sources]
alignment-comparison-plots = { git = "https://github.com/WISCLab/alignment-comparison-plots" }

[tool.shredguard]

[[tool.shredguard.patterns]]
regex = "\\b\\d{10}\\b|\\b\\d{3}[-.\\s]?\\d{3}[-.\\s]?\\d{4}\\b"
description = "Phone numbers (10 digits)"

[[tool.shredguard.patterns]]
regex = "\\d{3,5}_[MF]_+"
description = "Patient ID"
15 changes: 15 additions & 0 deletions uv.lock

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