GraphDB storage POC #2
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run_task now runs algorithm from local registry
Using official vantage6 python client
Made vserver depend on db
Pretty print results
No need to run setup_vserver anymore
Changed data for umcu
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Jun 22, 2020
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I'm assuming you don't want to actually merge these changes
Convert run_task.py into command line client
…tup into linked-data-poc Conflicts: run_task.py
…he graphdb instance
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Cool! So this works with the sparql query from vantage6-algorithms? Maybe it would be nice to demo this?
| Simply run: | ||
| ```shell script | ||
| docker-compose up -d | ||
| docker-compose up --force-recreate |
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Nice that you updated the readme as well 👍
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Serves as a POC for using GraphDB RDF-store as a data source instead of .csv. Relates to CARRIER-project/vantage6-algorithms#8
Changes allow for setting up a single vnode ('escience') which exposes a GraphDB endpoint. The GraphDB is populated with some sample data. Network is setup in such a way that the algorithm container can access the GraphDB endpoint. We can run a simple algorithm that queries this data (see CARRIER-project/vantage6-algorithms#8).