Downstream analysis

HaploC tools provide downstream analysis modules including

• differences in insulation between two haplotype-specific Hi-C maps diffIns
• differences in chromatin compartment organisation between the two two haplotype-specific Hi-C maps diffComp
• copy number status (CN) at both diploid and haploid level HaploCNV
• phase sequencing reads generated for the same individual using from any other platform phasingBam
• generate phased Hi-C maps from a new Hi-C dataset phasingNewHiC

Follow the link of each module to learn details on how to conduct the respective analyses

To learn more about the methodologies used and the strategies we employed to report the most relevant changes, please refer to the Methods section of our paper [link TBA].