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Change trace code due to update in PyMC library #528

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86 changes: 25 additions & 61 deletions Chapter1_Introduction/Ch1_Introduction_PyMC3.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -161,9 +161,7 @@
{
"cell_type": "code",
"execution_count": 1,
"metadata": {
"collapsed": false
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -285,9 +283,7 @@
{
"cell_type": "code",
"execution_count": 2,
"metadata": {
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},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -327,9 +323,7 @@
{
"cell_type": "code",
"execution_count": 3,
"metadata": {
"collapsed": false
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -414,9 +408,7 @@
{
"cell_type": "code",
"execution_count": 4,
"metadata": {
"collapsed": false
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -477,9 +469,7 @@
{
"cell_type": "code",
"execution_count": 5,
"metadata": {
"collapsed": false
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -540,9 +530,7 @@
{
"cell_type": "code",
"execution_count": 6,
"metadata": {
"collapsed": false
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -635,9 +623,7 @@
{
"cell_type": "code",
"execution_count": 7,
"metadata": {
"collapsed": false
},
"metadata": {},
"outputs": [
{
"name": "stderr",
Expand Down Expand Up @@ -671,9 +657,7 @@
{
"cell_type": "code",
"execution_count": 8,
"metadata": {
"collapsed": false
},
"metadata": {},
"outputs": [],
"source": [
"with model:\n",
Expand All @@ -693,9 +677,7 @@
{
"cell_type": "code",
"execution_count": 9,
"metadata": {
"collapsed": false
},
"metadata": {},
"outputs": [],
"source": [
"with model:\n",
Expand All @@ -714,9 +696,7 @@
{
"cell_type": "code",
"execution_count": 10,
"metadata": {
"collapsed": false
},
"metadata": {},
"outputs": [
{
"name": "stderr",
Expand All @@ -736,22 +716,18 @@
{
"cell_type": "code",
"execution_count": 11,
"metadata": {
"collapsed": false
},
"metadata": {},
"outputs": [],
"source": [
"lambda_1_samples = trace['lambda_1']\n",
"lambda_2_samples = trace['lambda_2']\n",
"tau_samples = trace['tau']"
"lambda_1_samples = trace['posterior']['lambda_1']\n",
"lambda_2_samples = trace['posterior']['lambda_2']\n",
"tau_samples = trace['posterior']['tau']"
]
},
{
"cell_type": "code",
"execution_count": 12,
"metadata": {
"collapsed": false
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -833,9 +809,7 @@
{
"cell_type": "code",
"execution_count": 13,
"metadata": {
"collapsed": false
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -903,9 +877,7 @@
{
"cell_type": "code",
"execution_count": 14,
"metadata": {
"collapsed": false
},
"metadata": {},
"outputs": [],
"source": [
"#type your code here."
Expand All @@ -921,9 +893,7 @@
{
"cell_type": "code",
"execution_count": 15,
"metadata": {
"collapsed": false
},
"metadata": {},
"outputs": [],
"source": [
"#type your code here."
Expand All @@ -939,9 +909,7 @@
{
"cell_type": "code",
"execution_count": 16,
"metadata": {
"collapsed": false
},
"metadata": {},
"outputs": [],
"source": [
"#type your code here."
Expand All @@ -964,9 +932,7 @@
{
"cell_type": "code",
"execution_count": 1,
"metadata": {
"collapsed": false
},
"metadata": {},
"outputs": [
{
"data": {
Expand Down Expand Up @@ -1037,19 +1003,17 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"anaconda-cloud": {},
"kernelspec": {
"display_name": "Python [bayes]",
"display_name": "Python 3",
"language": "python",
"name": "Python [bayes]"
"name": "python3"
},
"language_info": {
"codemirror_mode": {
Expand All @@ -1061,9 +1025,9 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.5.2"
"version": "3.8.10"
}
},
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}