|
| 1 | +import logging |
| 2 | + |
| 3 | +from cellprofiler_core.module import ImageProcessing |
| 4 | +from cellprofiler_core.object import Objects |
| 5 | +from cellprofiler_core.setting.choice import Choice |
| 6 | + |
| 7 | +LOGGER = logging.getLogger(__name__) |
| 8 | + |
| 9 | +__doc__ = f"""\ |
| 10 | +CrashModule |
| 11 | +=========== |
| 12 | +
|
| 13 | +**CrashModule** crashes |
| 14 | +
|
| 15 | +============ ============ =============== |
| 16 | +Supports 2D? Supports 3D? Respects masks? |
| 17 | +============ ============ =============== |
| 18 | +YES YES NO |
| 19 | +============ ============ =============== |
| 20 | +
|
| 21 | +""" |
| 22 | + |
| 23 | +DOCKER_IMAGE_NAME = "cellprofiler/crashdocker:0.0.1" |
| 24 | + |
| 25 | +class CrashModule(ImageProcessing): |
| 26 | + category = "Image Processing" |
| 27 | + |
| 28 | + module_name = "CrashModule" |
| 29 | + |
| 30 | + variable_revision_number = 1 |
| 31 | + |
| 32 | + def create_settings(self): |
| 33 | + super(CrashModule, self).create_settings() |
| 34 | + |
| 35 | + self.y_name.set_value("OutputImage") |
| 36 | + |
| 37 | + self.do_crash = Choice( |
| 38 | + text="Crash the run", |
| 39 | + choices=["Yes", "No"], |
| 40 | + value="Yes", |
| 41 | + doc="""\ |
| 42 | +Cause this module to crash or succeed |
| 43 | +""", |
| 44 | + ) |
| 45 | + |
| 46 | + def settings(self): |
| 47 | + return super().settings() + [ |
| 48 | + self.do_crash, |
| 49 | + ] |
| 50 | + |
| 51 | + def visible_settings(self): |
| 52 | + vis_settings = super().visible_settings() + [ |
| 53 | + self.do_crash, |
| 54 | + ] |
| 55 | + |
| 56 | + return vis_settings |
| 57 | + |
| 58 | + def run(self, workspace): |
| 59 | + print("CrashModule - I am running") |
| 60 | + self.function = self.do_run |
| 61 | + |
| 62 | + measurements = workspace.measurements |
| 63 | + for i in range(100): |
| 64 | + feature = "Blah%d" % i |
| 65 | + measurements.add_measurement( |
| 66 | + "Image", feature, i |
| 67 | + ) |
| 68 | + |
| 69 | + if self.do_crash == "Yes": |
| 70 | + super().run(workspace) |
| 71 | + raise Exception("I am crashing - run") |
| 72 | + else: |
| 73 | + super().run(workspace) |
| 74 | + |
| 75 | + def do_run(self, x_data, *args): |
| 76 | + return x_data |
| 77 | + |
| 78 | + def post_run(self, workspace): |
| 79 | + print("CrashModule - I am running post run") |
| 80 | + if self.do_crash == "Yes": |
| 81 | + raise Exception("I am crashing - post run") |
| 82 | + else: |
| 83 | + super().post_run(workspace) |
| 84 | + |
| 85 | + def display(self, workspace, figure): |
| 86 | + super().display(workspace, figure) |
| 87 | + |
| 88 | + def upgrade_settings(self, setting_values, variable_revision_number, module_name): |
| 89 | + return setting_values, variable_revision_number |
| 90 | + |
| 91 | + |
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