MultiQC_CMGG is a plugin for MultiQC containing customized modules and templates

For more information about MultiQC, see http://multiqc.info

Description

The MultiQC_CMGG plugin add a custom template, used for internal QC reports and module customizations that can't be merged in core MultiQC.

Installation

This plugin can be installed using the following methods

• using pip:

pip install --upgrade --force-reinstall git+https://github.com/CenterForMedicalGeneticsGhent/MultiQC_CMGG.git

• using setuptools:

git clone https://github.com/CenterForMedicalGeneticsGhent/MultiQC_CMGG
cd MultiQC_CMGG
python setup.py install

Usage

Modules

Name	Description
Sampletracking	Parse Picard CrosscheckFingerprints output and format sensible tables and plots

Templates

Name	Description
cmgg	CMGG specfic template with custom logo's and affiliate links. To enable this template, add the -t/--template cmgg option to the command line