#23 move test-vtk workflow #1
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: test-vtk | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: | |
| - "**" | |
| jobs: | |
| test-conda: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| vtk-version: ["8.2", "9.2"] | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - name: checkout chaste | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: Chaste/Chaste | |
| ref: develop | |
| path: Chaste | |
| submodules: recursive | |
| - name: checkout pychaste | |
| uses: actions/checkout@v4 | |
| with: | |
| path: Chaste/projects/PyChaste | |
| submodules: recursive | |
| - name: install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y cmake g++ xvfb | |
| - name: setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| use-mamba: true | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| channels: pychaste,conda-forge | |
| - name: install pychaste conda dependencies | |
| run: | | |
| mamba install -n test \ | |
| boost-cpp \ | |
| hdf5="*=*mpi_mpich*" \ | |
| metis \ | |
| mpich \ | |
| notebook \ | |
| parmetis \ | |
| petsc \ | |
| petsc4py \ | |
| six \ | |
| sundials \ | |
| vtk=${{ matrix.vtk-version }} \ | |
| tbb-devel \ | |
| xerces-c \ | |
| xsd \ | |
| xvfbwrapper \ | |
| xorg-libxext | |
| - name: make build directory | |
| run: | | |
| mkdir -p build | |
| - name: configure pychaste | |
| run: | | |
| export PETSC_DIR=$CONDA_PREFIX | |
| export HDF5_ROOT=$CONDA_PREFIX | |
| cmake \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DPython3_EXECUTABLE=$(which python) \ | |
| -DCMAKE_LIBRARY_PATH="${CONDA_PREFIX}/lib" \ | |
| -DCMAKE_PREFIX_PATH="${CONDA_PREFIX}" \ | |
| -DCMAKE_INSTALL_PREFIX="${CONDA_PREFIX}" \ | |
| -DBUILD_SHARED_LIBS=ON \ | |
| -DBOOST_ROOT="${CONDA_PREFIX}" \ | |
| -DHDF5_C_COMPILER_EXECUTABLE="${CONDA_PREFIX}/bin/h5pcc" \ | |
| -DVTK_DIR=${CONDA_PREFIX} \ | |
| -DXERCESC_INCLUDE="${CONDA_PREFIX}/include" \ | |
| -DXERCESC_LIBRARY="${CONDA_PREFIX}/lib/libxerces-c.so" \ | |
| -DXSD_EXECUTABLE="${CONDA_PREFIX}/bin/xsd" \ | |
| ../Chaste/ | |
| working-directory: build | |
| - name: build pychaste | |
| run: | | |
| cmake --build . --parallel $(nproc) --target project_PyChaste | |
| working-directory: build | |
| - name: build pychaste python module | |
| run: | | |
| cmake --build . --parallel $(nproc) --target project_PyChaste_Python | |
| working-directory: build | |
| - name: install pychaste | |
| run: | | |
| pip install . | |
| working-directory: build/projects/PyChaste/python | |
| - name: run tests | |
| run: | | |
| xvfb-run \ | |
| --server-args="-screen 0 1024x768x24" \ | |
| ctest -j $(nproc) -L PyChaste --output-on-failure | |
| working-directory: build |