v3.0.0

Multimodal
#125

v2.2.0 (OBSOLETE)

Upgrading to 3.0 multimodal instead

v2.1.1

mCIDE Revision: clif_microbiology_culture_organism_categories.csv
Removed duplicate clostridium_difficile category and merge its examples under clostridioides_difficile.

• Added description "Formerly clostridium difficile" to clostridioides_difficile
• Expanded organism_name_examples to include both naming conventions
  (clostridioides difficile, clostridium difficile, rare clostridioides difficile)
• Removed redundant clostridium_difficile row that duplicated the same organism
• Removed trailing empty line

v2.0.0

Release v2.0.0

Highlights

• Restructured outlier thresholds folder and updated files
  according to 2.0 format
• Added micro culture mapping files
• Added CPOT subcomponents to patient assessment categories
• CDC sepsis antibiotics added
• Added fluid electrolytes
• Updated lab categories with reference units
• Added project workflow documentation

Changelog

• sat-sbt mcide updated (4e93e60)
• added CPOT subcomponents to
  clif_patient_assessment_categories.csv (603ac61)
• CDC sepsis antibiotics added (8608d40)
• Updated location cats according to Issue 26 and lab cats in
  outlier file (2c44710)
• restructured outlier thresholds folder and updated files
  according to 2.0 format (744cb72)
• added micro culture mapping files (02f45f0)
• Updated discharge cat mappings for jail at UMN (614c1a3)
• Added fluid electrolytes according to Issue#18 (43179bc)
• Updated lab categories mCIDE with ref units (3de925c)
• Adding latest discharge cat mappings from UMN (fb3e750)
• Added project workflow documentation (10217b6)
• Removed 1.0 clifford (88d8016)

v2.1.0

Release v2.1.0

Clean and formatted change log for 2.1.0 available at website Change Log!

Highlights

• Revised ECMO/MCS schema and removed ecmo directory
• Added patient procedures mCIDE
• Added ~24 new organism categories with typo revisions
• Updated microbiology culture and non-culture categories
• Added NIH category columns
• Standardized all mCIDE CSV files to consistent documentation
  format
• Added lab_order_category mappings
• Added MAR action groups
• Included additional antibiotics and medication categories
• Added reference ranges for labs, vitals, and ECMO/MCS
• Updated SAT/SBT with _performed categories
• Added route categories for continuous and intermittent meds
• Added CRRT therapy mode categories
• MySQL DDL files included

Changelog

• doc: remove irrelevant examples (966bc5f)
• doc: revised ecmo_mcs schema (4195c7b)
• chore: reorganize and delete irrelevant files (4ee3721)
• doc: add patient procedures mcide #118 (ff80ffd)
• doc: add NIH category column (680ea96)
• doc: add lab_order_category (cfc3e22)
• doc: add mar_action_group #112 (01910ec)
• Standardize all mCIDE CSV files to consistent documentation
  format (6a72e7d)
• doc: ~24 new organism category, typos revised #111 (b5c0a9f)
• doc: add _performed SAT/SBT and regroup #107 (c9287d5)
• doc: remove non-sepsis combo meds #106 (06e1ec3)
• doc: include missing ASE CMS antibiotics (fe29c58)
• feat: add route category for continuous meds (6ecde04)
• doc: include outliers for crrt modes (12f3f27)
• Latest v.2.1 DDL (7290298)
• [DOC]: Upload mCIDEs for all *_category vars #87 (d585f19)
• Add typical lab category ranges (971cd9b)
• Fill med admin continuous typical dose ranges (4384d9b)
• Addition: Uploaded MYSQL DDL files (d29158a)
• SAT/SBT_delivery_pass_fail issue #76 (2cbef8f)
• Uploading ECMO mCIDE under issue #72 (3bb896f)
• Revised mCIDEs for Issues #39 and #16 (bf21e94)

CLIF-1.0

This version laid the groundwork for our ongoing development and research in critical care data analytics using CLIF.

Key Highlights

1. Concept Paper: CLIF-1.0 served as the foundation for our concept paper. Read the pre-print of the concept paper here: Concept Paper.

2. Repository Transition: This release was initially shared using a different GitHub repository, which is now deprecated. The previous repository can be accessed here: Deprecated Repository.

What's Included in This Release

• Entity Relationship Diagram (ERD): The ERD for CLIF-1.0 illustrates the structure and relationships between data elements.
• Common Data Elements: A comprehensive list of the common data elements utilized across projects conducted with CLIF-1.0.
• Proof of Concept Studies: The source code for the two proof of concept studies referenced in the concept paper is included in this release, demonstrating the application of CLIF-1.0.