Initial work for new 4.0 API#90

Draft

RalfG wants to merge 17 commits intodevfrom

feature/new-api

Commits on Apr 24, 2025

Split-up DeepLC class into separate functions (WIP)
RalfG
committed

Commits on Jun 5, 2025

Generate features as part of dataloader for optimized multiprocessing and batching
RalfG
committed

Commits on Jun 6, 2025

Simplify predict function and only predict unique peptidoforms:
RalfG
committed

Commits on Sep 23, 2025

Fully vectorize linear calibration
RalfG
committed

Commits on Dec 10, 2025

Commits on Jan 9, 2026

default patience to at least 10, change data import
ArthurDeclercq
committed

Commits on Jan 13, 2026