Skip to content

DEIB-GECO/GMQL

Folders and files

NameName
Last commit message
Last commit date

Latest commit

Sep 25, 2021
60e597b · Sep 25, 2021
Sep 14, 2021
Apr 10, 2018
May 10, 2019
Aug 30, 2018
May 10, 2019
Feb 18, 2018
Mar 24, 2019
Mar 27, 2019
May 10, 2019
Jul 5, 2019
Feb 17, 2017
Apr 16, 2019
Feb 28, 2018
Sep 25, 2021
Apr 4, 2017
Sep 26, 2016
Feb 27, 2020
Feb 2, 2018
Apr 8, 2018
Apr 8, 2018
Feb 17, 2018

Repository files navigation

GenoMetric Query Language (GMQL) Engine

Join the chat at https://gitter.im/DEIB-GECO/GMQL Build status Maven Central

A GMQL script is expressed as a sequence of GMQL operations with the following structure:

<dataset> = operation(<parameters>) <datasets>

where each dataset stands for a Genomic Data Model (GDM) dataset. Operations are either unary (with one input dataset), or binary (with two input datasets), and construct one result dataset.

For Quick Start please refer to:

Installation Guide

For detailed GMQL language documentation:

GMQL Language Commands and documentation.

For a look on GDMS architecture:

Engine architecture and deployments.

For programatical importing of GDMS kernel JARs in Scala applications and programatically scripting GMQL in Scala:

Scripting GMQL programatically.

For more information about GDMS repository architecture and repository manager:

Repository Manager

GDMS repository is based on a dataset notion, for more information about the data module and GDM dataset architecture:

GDM DataSet architecture.

Shell API is provided for GDMS repository, to list datasets, add, delete, alter datasets in GDMS repository:

Repository Manager shell API

The first step in the installation is to understand the engine configurations, currently we have two sets of configurations. One set of configurations for the repository and the other for the executor.

Engine Configurations.