TFHAZ

R/Bioconductor package to identify Transcription Factor High Accumulation DNA Zones

TFHAZ on Bioconductor

About

Requirements

The library requires the following:

• R version 3.5 or higher.

It is recommended the use of the latest version of R and RStudio.

Structure

TFHAZ/
|-- R/
|-- data/
|-- example_ENCODE/
|-- man/
|-- vignettes/
|-- .gitignore
|-- DESCRIPTION
|-- NAMESPACE
|-- README.md

• R folder containing all the script files
• data folder containing the datasets to run correctly all the tests
• example_ENCODE folder including a BED file with the HOT regions resulting from global analysis of recent ENCODE ChIP-seq Narrow peak data
• man folder containing R documentation files
• vignettes folder containing all the files used to generate the vignettes correctly