PeptoVarDB - human peptide annotation database for immunology: http://www.peptovar.online
PeptoVarDB is an on-line database of annotated peptides based on human genome annotation and public data of human genome common variants created with PeptoVar program in the pupulation mode. PeptoVar (Peptides of Variations) is a program for annotation of genomic variants in protein coding genes and generation of annotated peptides: https://open-projects.github.io/PeptoVar/. The main idea of PeptoVar is implementation of the potential compound effects of combining alternate alleles across multiple variant loci in sequence translation. PeptoVar is helpful for in-silico prediction of new minor histocompatibility antigen (MiHa), simulation of stem sells transplantation or as peptide database generator for shotgun proteomic studies of immunopeptidome.
- Linux
- Apache >= 2.4
- Perl >= 5.22
- DBD::mysql perl package
- MySQL >= 5.7
Copyright (c) 2018, D. Malko All Rights Reserved
PeptoVar is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.