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Paper/write joss paper #312

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merged 105 commits into from
Oct 17, 2024
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47f6def
Made some alterations to the paper.md - tiny things like funding ackn…
DavidT3 Mar 12, 2024
a5fcd27
Trying to make DAXA small caps
DavidT3 Mar 12, 2024
d66e64c
Finished a draft of the abstract/summary of DAXA paper
DavidT3 Mar 12, 2024
c7d3b9b
Finished a draft of the abstract/summary of DAXA paper
DavidT3 Mar 12, 2024
7a998da
Finished a draft of the abstract/summary of DAXA paper
DavidT3 Mar 12, 2024
45d0d17
Started the statement of need in the paper
DavidT3 Mar 12, 2024
cd3d633
Added more to the statement of need
DavidT3 Mar 12, 2024
40c73b9
Commit before I go home, been working on the statement of need - it i…
DavidT3 Mar 12, 2024
2e97e98
Added more to the statement of need.
DavidT3 Mar 13, 2024
af9ab83
Finished (again) a first pass of a bad statement of need paragraph
DavidT3 Mar 13, 2024
ff1766e
Added research projects using DAXA section
DavidT3 Mar 13, 2024
1630bac
Added some entries to the bibtex file
DavidT3 Mar 13, 2024
11927e1
Added stuff to the existing software packages section
DavidT3 Mar 13, 2024
4665d59
Finished a first pass of the existing software packages section
DavidT3 Mar 13, 2024
9cc4254
Added future work section
DavidT3 Mar 13, 2024
d8644ef
Started to write the features section
DavidT3 Mar 13, 2024
7554157
Added more to the features section
DavidT3 Mar 13, 2024
33a6057
Changed the paper title
DavidT3 Mar 13, 2024
4f698dd
Finished off a first pass at the DAXA paper features section
DavidT3 Mar 13, 2024
8f905a1
Trying to make the MSU affiliation shorted
DavidT3 Mar 13, 2024
333b964
Trying to make the MSU affiliation shorted
DavidT3 Mar 13, 2024
ed834c4
That did not work
DavidT3 Mar 13, 2024
5a6e739
Removed Paul and Kathy from the author list for now - I was reminded …
DavidT3 Mar 14, 2024
d10d9b2
Added Jessica STFC code
DavidT3 Mar 18, 2024
4278930
Re-added Paul and Kathy. Also think I've made sure all telescope name…
DavidT3 Mar 20, 2024
4448d7f
Modifying the statement of need to match my notes
DavidT3 Mar 20, 2024
7cd64c4
Added a couple of examples of important uses of X-ray telescopes in d…
DavidT3 Mar 20, 2024
bf55bea
Trying to make quotation marks work properly
DavidT3 Mar 20, 2024
40384f0
All X-ray desert quotation marks should render properly now
DavidT3 Mar 20, 2024
fd36a56
Added some telescope mission papers to reference
DavidT3 Mar 20, 2024
6cf5764
Added some telescope mission papers to reference
DavidT3 Mar 20, 2024
cd3b9d6
Added some telescope mission papers to reference
DavidT3 Mar 20, 2024
59441eb
Made more changes to the statement of need section
DavidT3 Mar 20, 2024
9762c9b
Changes made in the features section
DavidT3 Mar 20, 2024
028b4cc
More changes made in the features section
DavidT3 Mar 20, 2024
3c97574
Finished changes to the features section for now
DavidT3 Mar 20, 2024
e4ffbc3
Finished current changes to the existing software section
DavidT3 Mar 20, 2024
01c4cf0
Adding some LoVoCCS references
DavidT3 Mar 20, 2024
05cbdde
Added an OVI groups reference, and altered some of the existing bib e…
DavidT3 Mar 20, 2024
10075bd
Trying to make the X-LoVoCCS reference appear properly in the paper
DavidT3 Mar 20, 2024
57c2a95
Trying to make the X-LoVoCCS reference appear properly in the paper
DavidT3 Mar 20, 2024
06d8345
Added a flowchart to the DAXA paper
DavidT3 Mar 30, 2024
0b0ef87
Moved the flowchart
DavidT3 Mar 30, 2024
be81919
Moved the flowchart again
DavidT3 Mar 30, 2024
0390055
Moved the flowchart YET again
DavidT3 Mar 30, 2024
3f17dad
Updated the DAXA flowchart to the latest one Jess produced - will get…
DavidT3 Apr 23, 2024
ac10353
Updated the flowchart to Jess's latest version
DavidT3 Apr 24, 2024
009ac1b
Making a version of the paper without a note to self in it
DavidT3 Apr 25, 2024
74ed701
Added a compiled draft PDF of the paper - basically so I can point so…
DavidT3 Apr 25, 2024
3ba8461
Updated the date
DavidT3 Apr 25, 2024
f243beb
Rebuilding the paper
DavidT3 May 13, 2024
6510e3d
Added some more important X-ray paper references, and older ones from…
DavidT3 Jul 26, 2024
1e99d91
Added Ray to the author list of the paper
DavidT3 Jul 26, 2024
5f99eb0
Added Ray's OrcID to the DAXA paper
DavidT3 Jul 29, 2024
3ccb6ef
Removed a comma in the paper
DavidT3 Aug 29, 2024
08c7848
Making some changes to the DAXA paper from the read through I did ear…
DavidT3 Aug 30, 2024
767055c
Made the rest of the changes to the paper from my read through earlier.
DavidT3 Aug 30, 2024
3c62a4e
Put the figure caption back on to one line to try and make the paper …
DavidT3 Aug 30, 2024
7ebbfeb
Still trying to make the paper build again
DavidT3 Aug 30, 2024
6fefbd6
Still still trying to make the paper build again
DavidT3 Aug 30, 2024
976a6d4
Trying to make both stellar winds references appear
DavidT3 Aug 30, 2024
ccca256
Removed a blank space
DavidT3 Aug 30, 2024
76f1cd8
Trying to make the 2nd address go down onto the second line
DavidT3 Aug 30, 2024
5d61452
Trying to make the 2nd address go down onto the second line - take two
DavidT3 Aug 30, 2024
93a8156
Trying to make the 2nd address go down onto the second line - take th…
DavidT3 Aug 30, 2024
7fb2c9b
Tiny change
DavidT3 Aug 30, 2024
5700aa2
Tiny change
DavidT3 Aug 30, 2024
b809767
Started acting on Amanda's suggestions from her read through
DavidT3 Sep 5, 2024
7b464ba
Incorporated Amanda's suggestions for the summary section of the paper
DavidT3 Sep 5, 2024
4907189
Adding more of Amanda's comments, and corrected something where 'eROS…
DavidT3 Sep 6, 2024
58b6099
Getting near the end of the suggested changes - also added Amanda to …
DavidT3 Sep 6, 2024
97071bb
Re-added detail on updating archives to the paper
DavidT3 Sep 6, 2024
ff6acad
Added mention of the figure (which for some reason I didn't talk abou…
DavidT3 Sep 6, 2024
41dbf45
Rearranged the statement of need section, I think the changes are done!
DavidT3 Sep 6, 2024
b48ed6c
Added a draft pdf
DavidT3 Sep 6, 2024
28375a3
Added a draft pdf
DavidT3 Sep 6, 2024
350c933
Made a couple of very minor alterations
DavidT3 Sep 6, 2024
8222fc9
Made a wording change to the summary
DavidT3 Sep 6, 2024
2dda825
Changed one use of 'package' to 'module'
DavidT3 Sep 6, 2024
0f799d0
Changed one word in caption figure
DavidT3 Sep 27, 2024
b3a752d
Trying to make the build action work
DavidT3 Sep 27, 2024
763bf88
Removed a space
DavidT3 Sep 27, 2024
11157fa
Still trying to make paper building work again
DavidT3 Sep 27, 2024
c85f6f0
Changed the markdown line breaks slightly
DavidT3 Sep 27, 2024
cf0cd69
Trying a different version of the draft builder
DavidT3 Sep 27, 2024
fc89b9c
Changed the paper date
DavidT3 Sep 27, 2024
5ae6d9a
STILL trying to make the action work again
DavidT3 Sep 27, 2024
d962d00
Removed 'east' from 'east lansing'
DavidT3 Sep 27, 2024
6be09f5
STIIIIILL
DavidT3 Sep 27, 2024
3c09458
Changed Lansing to E. Lansing
DavidT3 Sep 27, 2024
ae2539c
Changed the name of the draft action.
DavidT3 Sep 27, 2024
f5a6aac
I beg you please compile the paper
DavidT3 Sep 29, 2024
767dee0
The new paper compile might actually work now!
DavidT3 Sep 30, 2024
0c2a4d2
The new paper compile might actually work now!
DavidT3 Sep 30, 2024
4c7b830
The new paper compile might actually work now! - take two
DavidT3 Sep 30, 2024
f39bd37
The new paper compile might actually work now! - take two
DavidT3 Sep 30, 2024
f5ecadd
Trying an old arg to make tex files?
DavidT3 Sep 30, 2024
b077116
Trying an old arg to make tex files?
DavidT3 Sep 30, 2024
6e61bd0
Removed corresponding email as it was breaking the paper compilation
DavidT3 Oct 8, 2024
b191855
Trying to make it build - added quotes around affiliation indexes
DavidT3 Oct 8, 2024
7efc9a8
STILL trying to make it build for editor bot
DavidT3 Oct 8, 2024
dbf69c3
ANother try at quoting the affiliation indexes
DavidT3 Oct 8, 2024
8708053
Added new draft pdf
DavidT3 Oct 10, 2024
cee69ea
Removed the section on current uses of DAXA
DavidT3 Oct 11, 2024
31af3d9
Added the arXiv version of the paper as the 'draft' pdf, and also ren…
DavidT3 Oct 17, 2024
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Original file line number Diff line number Diff line change
Expand Up @@ -17,42 +17,44 @@ on:
# slightly more pretty
jobs:
paper:
# Sets up the run on the latest version of Ubuntu they have 'in stock'
runs-on: ubuntu-latest
# Names the job
name: Paper Draft
# Sets up the steps of the job, firstly we check out the master branch
steps:
- name: Checkout
uses: actions/checkout@v2
- name: Build TeX and PDF
uses: docker://openjournals/paperdraft:latest
uses: actions/checkout@v4
- name: Build draft PDF
uses: openjournals/openjournals-draft-action@master
with:
journal: joss
# This should be the path to the paper within your repo.
paper-path: paper/paper.md
args: '-k paper/paper.md'
# Sets the specific journal to be built for, and where the Markdown file lives
env:
GIT_SHA: $GITHUB_SHA
JOURNAL: joss
- name: Upload
uses: actions/upload-artifact@v1
uses: actions/upload-artifact@v4
with:
name: paper
path: paper/
# This is the output path where Pandoc will write the compiled
# PDF. Note, this should be the same directory as the input
# paper.md
path: paper/paper.pdf

#jobs:
# paper:
# runs-on: ubuntu-latest
# # Names the job
# name: Paper Draft
# # Sets up the steps of the job, firstly we check out the master branch
# steps:
# - name: Checkout
# uses: actions/checkout@v2
# # Then use the JOSS action to build the paper
# - name: Build draft PDF
# uses: openjournals/openjournals-draft-action@master
# # Sets the specific journal to be built for, and where the Markdown file lives
# uses: actions/checkout@v4
# - name: Build TeX and PDF
# uses: openjournals/[email protected]
# with:
# journal: joss
# paper-path: paper/paper.md
# args: '-k paper/paper.md'
# # Sets the specific journal to be built for, and where the Markdown file lives
# - name: Upload
# uses: actions/upload-artifact@v1
# uses: actions/upload-artifact@v4
# with:
# name: paper
# # This is the output path where Pandoc will write the compiled PDF
# path: paper/paper.pdf
# path: paper/
8 changes: 8 additions & 0 deletions paper/archive.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,8 @@
[//]: # (; from in-solar-system objects, to )
[//]: # (supernovae, to galaxies and galaxy clusters.)

[//]: # (Any such change will be recorded in the archive history, and processed )

[//]: # (observations version controlled, so that the data archive can have a specific version that refers to its exact state )

[//]: # (at any given time; this version can be referred to in published work using the data archive.)
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