Institute of Environmental Science and Research
- 35 followers
- New Zealand
- http://www.esr.cri.nz
Popular repositories Loading
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human_genomics_pipeline
human_genomics_pipeline PublicA Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
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covid_in_wastewater
covid_in_wastewater PublicQuantitative data about how much SARS-CoV2 virus is found in New Zealand's wastewater
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nz-sars-cov2-variants
nz-sars-cov2-variants PublicData on prevalence of variants of concern in Aotearoa New Zealand
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vcf_annotation_pipeline
vcf_annotation_pipeline PublicA Snakemake workflow to filter, annotate and prepare variant call format (VCF) data for scout using GATK4, SnpSift, VEP and genmod. Designed to be used after human_genomics_pipeline.
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Repositories
- covid_in_wastewater Public
Quantitative data about how much SARS-CoV2 virus is found in New Zealand's wastewater
- Notifiable-Diseases-Annual-Dashboard- Public
This repository is to make Annual Notifiable Disease Dashboard data public.
- viralrecon Public Forked from nf-core/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
- human_genomics_pipeline Public
A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
- vcf_annotation_pipeline Public
A Snakemake workflow to filter, annotate and prepare variant call format (VCF) data for scout using GATK4, SnpSift, VEP and genmod. Designed to be used after human_genomics_pipeline.