Pin colors Histogram

CHANGELOG.md

@@ -1,19 +1,54 @@
 # CHANGELOG
 
 
-## v0.8.7 (2025-04-03)
+## v0.9.0 (2025-05-23)
+
+### Step
+
+- Bumping minor version
+  ([`e333641`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/e3336417a09b4ef26e71bde1b54da840f0980ab9))
+
+
+## v0.8.11 (2025-05-23)
 
 ### Bug Fixes
 
+- **_ripley**: Fixed conflicts
+  ([`fa4c06f`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/fa4c06f697ebe95438c3fc583e7767399b72dcf7))
+
+- **_ripley**: Removed old call
+  ([`e89835b`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/e89835b339034d6c543bd4b6231508811828c26d))
+
+- **core**: Return hist_data instead of original data
+  ([`2734421`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/27344216b2d0f1fef43ac0e66fc1613ddfbf9349))
+
 - **core**: Specify weights for all histplot calls
   ([`b661495`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/b66149509fa4aa2280d14dfa6e83567c95c87cf8))
 
 - **docstring**: Add returned df to doctstring
   ([`9caddca`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/9caddca51e69e2213da866d9f74c6abe9ab7c181))
 
+- **interactive_spatial_plot**: Fixed typos in api name and arguments
+  ([`b833123`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/b833123dc9f124abf34e539be553a8388048ee1b))
+
+- **knn clustering**: Fixed conflict in imports
+  ([`e6d5f1e`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/e6d5f1eb4668d8e25ed09469525e128abcabbb6a))
+
+- **knn_clustering**: Fixed format of the error message
+  ([`ddf92e6`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/ddf92e63c760c56e035071c0edc2ce245aa3fb7c))
+
+- **present_summary_as_figure**: Fixed json conversion when non python types are used
+  ([`61c8480`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/61c848051cf86f6cf1cff5fe9bf012bb1c12c9d2))
+
 - **relational_heatmap**: Adjusted the flipped axis labels
   ([`5d950bb`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/5d950bb0bb3dd2f45e32d4bd7c4aa15f939922ac))
 
+- **select_values**: Added support when observation are numerical
+  ([`4bcbaa2`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/4bcbaa249e70c51860ae55356c5b6ab2bf8961bc))
+
+- **summarize_dataframe**: Remove duplicated missing index
+  ([`2c0d907`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/2c0d9077ea9414172090d8c10488f75360430e10))
+
 - **tests**: Add tests for figure_type and showfliers params
   ([`3488a59`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/3488a597ead551285f8791d4028fe800a3c822d4))
 
@@ -29,43 +64,38 @@
 - **tests**: Update tests to match new return param
   ([`da83e3d`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/da83e3dcef1b7ccb7de6e6854613f63bef7e8780))
 
-### Features
-
-- **core**: Change histogram/boxplot return types to dicts
-  ([`bf160c2`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/bf160c24c8fca82ad9057fb2be049b200f4f7139))
-
-- **core**: Changed histogram to precompute data.
-  ([`0201c6f`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/0201c6f153b440c7b93494fc5355dcf1fe446c28))
-
-- **core**: Changed how boxplot return type is handled
-  ([`714bf98`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/714bf98e2acf8b42b39588ec866f87ac38979dd0))
+- **visualize_nearest_neighbor**: Add comments on function and refactor unit tests
+  ([`fa20694`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/fa206948af9db292a6389ddfedd142ac8563f5f9))
 
-- **core**: Use plotly figure for static plot instead of png
-  ([`5738234`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/5738234fc7e16cc8f9c1e421343028976f73ecc2))
+- **visualize_nearest_neighbor**: Rewrite unit tests and move up library in function
+  ([`4b49fac`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/4b49fac0e56949a2a66a2c7c5a415733ba5e7aef))
 
+### Build System
 
-## v0.8.6 (2025-03-18)
+- Restored docker file to FNLCR organization
+  ([`739b4b3`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/739b4b3221efec4af2e9228aa8b3260f74a541bf))
 
-### Bug Fixes
+### Code Style
 
-- **_ripley**: Fixed conflicts
-  ([`fa4c06f`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/fa4c06f697ebe95438c3fc583e7767399b72dcf7))
+- **knn_clustering**: Adjusted to code style standar
+  ([`2b02538`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/2b02538d4d15a748ce399eb3837dc51eb99108f6))
 
-- **_ripley**: Removed old call
-  ([`e89835b`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/e89835b339034d6c543bd4b6231508811828c26d))
+### Continuous Integration
 
-- **interactive_spatial_plot**: Fixed typos in api name and arguments
-  ([`b833123`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/b833123dc9f124abf34e539be553a8388048ee1b))
+- **version**: Automatic development release
+  ([`195761d`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/195761de5563e80a60a7ea43ecb73e6105dc7d1d))
 
-- **present_summary_as_figure**: Fixed json conversion when non python types are used
-  ([`61c8480`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/61c848051cf86f6cf1cff5fe9bf012bb1c12c9d2))
+- **version**: Automatic development release
+  ([`f1b0ab2`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/f1b0ab271b53758668f5256bdc63004ae007741a))
 
-### Build System
+- **version**: Automatic development release
+  ([`70c004e`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/70c004e2079086aa46e38db7803c7c52e6c3356b))
 
-- Restored docker file to FNLCR organization
-  ([`739b4b3`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/739b4b3221efec4af2e9228aa8b3260f74a541bf))
+- **version**: Automatic development release
+  ([`b2921d7`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/b2921d70a7c2d8928f9b48d047a625aebea2d55b))
 
-### Continuous Integration
+- **version**: Automatic development release
+  ([`1ad51bb`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/1ad51bb329ec95c14de24e276bbf36c7375081b5))
 
 - **version**: Automatic development release
   ([`627b384`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/627b3846a0d913318c846fc73f11d6141fc6a64e))
@@ -93,12 +123,34 @@
 - **_ripley_l_multiple**: Enabled edget correction to remove center cell near border
   ([`87324fd`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/87324fd1f168df6a809cf94321d10c632d2b9448))
 
+- **core**: Change histogram/boxplot return types to dicts
+  ([`bf160c2`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/bf160c24c8fca82ad9057fb2be049b200f4f7139))
+
+- **core**: Changed histogram to precompute data.
+  ([`0201c6f`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/0201c6f153b440c7b93494fc5355dcf1fe446c28))
+
+- **core**: Changed how boxplot return type is handled
+  ([`714bf98`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/714bf98e2acf8b42b39588ec866f87ac38979dd0))
+
+- **core**: Use plotly figure for static plot instead of png
+  ([`5738234`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/5738234fc7e16cc8f9c1e421343028976f73ecc2))
+
+- **pin_color**: Add pin color feature to visualize nearest neighbor and helpers and unit test files
+  individually
+  ([`6e0adc9`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/6e0adc9aaf63c443c615e27dd3d6a6ded4a4b391))
+
 - **ripley_l**: Added edge correction parameter to the high level function
   ([`9a54f15`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/9a54f150c88cd4e86c0559d22ecf3f663bc6afd9))
 
 - **summarize dataframe**: Added two visualization functions for the summary
   ([`66fdd4e`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/66fdd4e4e7c136d4aec3e4c7b49958a5af020858))
 
+- **visualize_nearest_neighbor**: Add pin-color and corresponding unit test
+  ([`015692f`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/015692f87e75e5c4581638dedd4d277c63c6ddec))
+
+- **visualize_nn**: Add pin-color feature and enhance layout of fig and ax
+  ([`22e047a`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/22e047aa3d765469c8d0acd32f8ea3d8be5b27bd))
+
 ### Performance Improvements
 
 - Updating the default colormap for interactive spatial to rainbow
@@ -123,6 +175,12 @@
 
 ### Testing
 
+- **comments**: Add extensive comments for complex data set generation in utag tests
+  ([`ef95276`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/ef952769f8d20310903f8a9269772a67cb1057d4))
+
+- **comments**: Add extensive comments for complex data set generation in utag tests
+  ([`cd8cb25`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/cd8cb25764a3a5f4718692dea3585bae17f88105))
+
 - **compute_box_plot_metric**: Added verbose error message and check
   ([`fb3a372`](https://github.com/FNLCR-DMAP/SCSAWorkflow/commit/fb3a372d9f0cb2613ab77bda8e3c2407a6dd0e4c))
 

README.md

@@ -5,6 +5,7 @@ This Python-based package leverages the anndata framework for easy integration w
 
 ## Installing SPAC with Conda
 Run the following command to establish the Conda environment supporting usage and contribution to spac package:
+Latest released version is v0.9.0 at 5/23/2025
 ```bash
 cd <home directory of SCSAWorkflow folder>
 # If conda is not activate