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Merge branch 'main' of github.com:FNNDSC/pl-gifit
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jennydaman committed Feb 9, 2024
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Expand Up @@ -29,7 +29,7 @@ run from either within _ChRIS_ or the command-line.

The easiest way to run `pl-gifit` is using this pipeline which accepts
subplate segmentations as inputs and extracts both inner and outer subplate surfaces.
Pipeline is WIP and currently not available.
https://github.com/FNNDSC/Fetal_Brain_MRI_Surface_Extraction_Pipeline/blob/main/Snakefile

To run `pl-gifit` manually, you must prepare its input directory according to its expected convention.
The input directory should contain subdirectories where each subdirectory contains a brain.
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