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[Update] FB2024_04 BLAST config #6

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[Update] FB2024_04 BLAST config #6

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49 changes: 48 additions & 1 deletion conf/databases.FB.FB2024_04.json
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Original file line number Diff line number Diff line change
Expand Up @@ -570,6 +570,20 @@
"taxon_id": "7227",
"uri": "https://ftp.flybase.org/alliance/blast/dmel-assembly.fasta.gz",
"version": "r6.59",
"genome_browser": {
"assembly": "Drosophila_melanogaster",
"data_url": "https://s3.amazonaws.com/agrjbrowse/MOD-jbrowses/FlyBase/FB2024_04/d_melanogaster/",
"gene_track": "Curated Genes",
"mod_gene_url": "https://flybase.org/reports/",
"tracks": [
"Drosophila_melanogaster_all_genes",
"Drosophila_melanogaster_ht_variants",
"Drosophila_melanogaster_variants",
"Drosophila_melanogaster_multiple-variant_alleles"
],
"type": "jbrowse",
"url": "https://flybase.org/jbrowse/?data=data/json/dmel"
},
"seqtype": "nucl"
},
{
Expand Down Expand Up @@ -2101,6 +2115,39 @@
"version": "GCF_005508785.2_pea_aphid_22Mar2018_4r6ur_v2",
"seqtype": "prot"
},
{
"blast_title": "P. humanus Genome Assembly (GCF_000006295.1_JCVI_LOUSE_1.0)",
"description": "Pediculus humanus genome assembly",
"genus": "Pediculus",
"md5sum": "95013226eb9e37ee33880b6b78ad2e52",
"species": "humanus",
"taxon_id": "121225",
"uri": "ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Pediculus_humanus/latest_assembly_versions/GCF_000006295.1_JCVI_LOUSE_1.0/GCF_000006295.1_JCVI_LOUSE_1.0_genomic.fna.gz",
"version": "GCF_000006295.1_JCVI_LOUSE_1.0",
"seqtype": "nucl"
},
{
"blast_title": "P. humanus RNA Sequences (GCF_000006295.1_JCVI_LOUSE_1.0)",
"description": "Pediculus humanus RNA sequences",
"genus": "Pediculus",
"md5sum": "71afca186069745c365b3ada90267984",
"species": "humanus",
"taxon_id": "121225",
"uri": "ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Pediculus_humanus/latest_assembly_versions/GCF_000006295.1_JCVI_LOUSE_1.0/GCF_000006295.1_JCVI_LOUSE_1.0_rna.fna.gz",
"version": "GCF_000006295.1_JCVI_LOUSE_1.0",
"seqtype": "nucl"
},
{
"blast_title": "P. humanus Protein Sequences (GCF_000006295.1_JCVI_LOUSE_1.0)",
"description": "Pediculus humanus protein sequences",
"genus": "Pediculus",
"md5sum": "4d2b8901f0390d8ebec770e93a0a048b",
"species": "humanus",
"taxon_id": "121225",
"uri": "ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Pediculus_humanus/latest_assembly_versions/GCF_000006295.1_JCVI_LOUSE_1.0/GCF_000006295.1_JCVI_LOUSE_1.0_protein.faa.gz",
"version": "GCF_000006295.1_JCVI_LOUSE_1.0",
"seqtype": "prot"
},
{
"blast_title": "I. scapularis Genome Assembly (GCF_016920785.2_ASM1692078v2)",
"description": "Ixodes scapularis genome assembly",
Expand Down Expand Up @@ -2171,7 +2218,7 @@
"metadata": {
"contact": "[email protected]",
"dataProvider": "FB",
"dateProduced": "2024-09-08T18:57:52.919636",
"dateProduced": "2024-10-01T04:17:00.653360",
"homepage_url": "https://flybase.org",
"logo_url": "https://flybase.org/images/fly_logo.png",
"release": "FB2024_04",
Expand Down