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Two small bugs #157

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5386336
change to paste in peakAnnoEnrichment
jgranja24 May 12, 2020
8c9e0bc
bugfix
jgranja24 May 12, 2020
dfbd590
include dot removal in correlate matrices
jgranja24 May 12, 2020
a0a2d10
update documentation
jgranja24 May 12, 2020
2a16186
Update DESCRIPTION
jgranja24 May 12, 2020
9ad0c51
bugfix returning 1 peak from peakset
jgranja24 May 13, 2020
dcf5c69
add log messages to peak coaccessibility
jgranja24 May 13, 2020
ee7f521
check for space in output directory
jgranja24 May 13, 2020
f0b1c8d
getTrajectory force class structure
jgranja24 May 13, 2020
7011965
force trajectory between 0 and 100 and numeric
jgranja24 May 13, 2020
988ab93
update incase normQ is length 1
jgranja24 May 14, 2020
cb5572f
Update LoggerUtils.R
jgranja24 May 14, 2020
0660b4e
disable chrPrefix
jgranja24 May 14, 2020
6335e28
fix to declare assay as an array
scfurl May 17, 2020
bcbf41f
add single quotes to allow unix mv to copy filenames with spaces
scfurl May 17, 2020
5f45317
fix for file paths containing spaces when calling macs2
scfurl May 18, 2020
2be85a2
fixed system calls to macs2 where filenames have spaces
scfurl May 18, 2020
3471c93
added projectData which projects single cells onto single cells
scfurl May 27, 2020
799d296
nm
scfurl Jun 28, 2020
4bcb9bb
nm
scfurl Jun 28, 2020
a417fc9
allow spaces
Jun 29, 2020
3be5d39
bug in FilterCells saving date
scfurl Jul 1, 2020
91910c1
Add exportMonocle3 function
scfurl Jul 9, 2020
271492d
allow spaces
scfurl Sep 1, 2020
57cf0b5
add featureDF to GRanges function
scfurl Sep 3, 2020
56a5dd1
Untrack files in .gitignore
scfurl Sep 3, 2020
57881be
fixed Monocle3 export of GeneActivityMatrix
scfurl Sep 3, 2020
627b7ba
reorder seqlevels pulling from geneAnnotation slot
scfurl Sep 3, 2020
2534071
multiple arrows
scfurl Nov 11, 2020
03b4ce7
Merge branch 'master' of https://github.com/scfurl/ArchR
scfurl Nov 11, 2020
c48378a
multiplearrows
scfurl Nov 11, 2020
dbe56e7
multiple arrows
scfurl Nov 11, 2020
b1ee105
merging greanleaf version 1.0
jgranja24 Oct 29, 2020
c5cf785
resolve conflicts
scfurl Nov 11, 2020
f40483f
catching up1
scfurl Nov 11, 2020
96b8ebe
Merge remote-tracking branch 'gleaf/master'
scfurl Nov 11, 2020
784fac3
updated finally
scfurl Nov 11, 2020
4e3695c
unknown
scfurl Nov 17, 2020
f0559fb
Merge branch 'master' of https://github.com/scfurl/ArchR
scfurl Nov 17, 2020
110071a
bugfix
Nov 20, 2020
40bede0
bugfix remove sys.time for weird error in R 4.0
jgranja24 Nov 23, 2020
4820aa7
bug fix new uwot save and loading features
jgranja24 Nov 23, 2020
523cc7c
deprecated
jgranja24 Nov 23, 2020
c582e52
uwot_savebug
Nov 23, 2020
a22aa29
update to 1.0.1
jgranja24 Feb 22, 2021
a83e23b
vb
scfurl May 4, 2021
a9aef7d
Merge branch 'master' of https://github.com/GreenleafLab/ArchR into G…
scfurl Oct 4, 2023
bafb605
Merge pull request #2 from scfurl/GreenleafLab-master
scfurl Oct 4, 2023
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2 changes: 2 additions & 0 deletions .Rbuildignore
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^.*\.Rproj$
^\.Rproj\.user$
335 changes: 0 additions & 335 deletions .Rhistory
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2 changes: 2 additions & 0 deletions .gitignore
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.DS_Store
.DS_Store
.Rproj.user
.Rhistory
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