Helix Research Lab
- 15 followers
- United States of America
- https://helix.stanford.edu/
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Pool_PaRTI
Pool_PaRTI PublicPooling by PageRank Token Importance. This is a weighted average pooling method where the weights are derived from the internal attention matrices of the encoder.
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COLLAPSE
COLLAPSE PublicForked from awfderry/COLLAPSE
Representation learning for protein functional site analysis
Python 1
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opioid-social-media-platforms
opioid-social-media-platforms PublicForked from kristycarp/opioid-social-media-platforms
Assessing social media platforms for utility in monitoring the opioid epidemic.
R
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gpt3-lexicon
gpt3-lexicon PublicForked from kristycarp/gpt3-lexicon
Using GPT-3 to build colloquial lexicons of drug terms. A companion to "Using GPT-3 to Build a Lexicon of Drugs of Abuse Synonyms for Social Media Pharmacovigilance." (Carpenter and Altman, 2023)
Python
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ml-structure-bias
ml-structure-bias PublicForked from awfderry/ml-structure-bias
Code for "Training data composition affects performance of protein structure analysis algorithms", published at the Pacific Symposium on Biocomputing 2022
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Repositories
- Pool_PaRTI Public
Pooling by PageRank Token Importance. This is a weighted average pooling method where the weights are derived from the internal attention matrices of the encoder.
Helix-Research-Lab/Pool_PaRTI’s past year of commit activity - opioid-social-media-platforms Public Forked from kristycarp/opioid-social-media-platforms
Assessing social media platforms for utility in monitoring the opioid epidemic.
Helix-Research-Lab/opioid-social-media-platforms’s past year of commit activity - PARSE Public Forked from awfderry/PARSE
Protein Annotation by Residue-Specific Enrichment: a site-based statistical method for interpretable protein function annotation
Helix-Research-Lab/PARSE’s past year of commit activity - kgemb-sens Public Forked from dnsosa/kgemb-sens
A package for setting up and running experiments on the sensitivity of knowledge graph (KG) embedding methods to sparsity and inconsistency.
Helix-Research-Lab/kgemb-sens’s past year of commit activity - lit_contextizer Public Forked from dnsosa/lit_contextizer
A package for augmenting extracted protein-protein relations with cell type and tissue context extracted from biomedical text.
Helix-Research-Lab/lit_contextizer’s past year of commit activity - pan_omics_psych Public Forked from mguo123/pan_omics_psych
Processing Scripts for RNA, ATAC, HiChIP data associated with the Guo et al. paper "Compendium of functional regulatory variants in human neuropsychiatric disease."
Helix-Research-Lab/pan_omics_psych’s past year of commit activity - gpt3-lexicon Public Forked from kristycarp/gpt3-lexicon
Using GPT-3 to build colloquial lexicons of drug terms. A companion to "Using GPT-3 to Build a Lexicon of Drugs of Abuse Synonyms for Social Media Pharmacovigilance." (Carpenter and Altman, 2023)
Helix-Research-Lab/gpt3-lexicon’s past year of commit activity
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