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Prepare release 0.5.5 #4989

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Run time

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Job	Run time
docs (3.11)	13m 22s
base (3.10)	7m 22s
hierarchical (3.10)	4m 12s
base (3.12)	9m 29s
julia (3.10)	16m 15s
hierarchical (3.12)	7m 18s
julia (3.12)	15m 21s
mac (3.12)	23m 35s
notebooks1 (3.10)	8m 4s
notebooks2 (3.10)	6m 29s
optimize (3.12)	4m 24s
petab (3.10)	13m 50s
quality (3.12)	16s
petab (3.12)	16m 31s
select (3.10)	7m 47s
windows (3.12)	1m 29s
select (3.12)	7m 50s
	2h 43m 34s