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Prepare release 0.5.5 #4992

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Run time

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Job	Run time
docs (3.11)	14m 15s
base (3.10)	7m 17s
julia (3.10)	15m 51s
base (3.12)	8m 10s
hierarchical (3.10)	4m 47s
julia (3.12)	15m 40s
hierarchical (3.12)	4m 50s
mac (3.12)	26m 59s
notebooks1 (3.10)	9m 7s
notebooks2 (3.10)	6m 14s
optimize (3.12)	4m 25s
petab (3.10)	14m 29s
petab (3.12)	15m 57s
quality (3.12)	17s
select (3.10)	8m 33s
windows (3.12)	2m 3s
select (3.12)	8m 12s
	2h 47m 6s