Code

Tag New Release of 0.5.0#76

Code

Merged

TheCedarPrince merged 78 commits intomainJuliaHealth/OMOPCDMCohortCreator.jl:mainfrom v0.5JuliaHealth/OMOPCDMCohortCreator.jl:v0.5Copy head branch name to clipboardFeb 22, 2024

+251-16

Commits

Commits on Jul 29, 2022

• Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM

  TheCedarPrince

  committed
  67e276c

  Copy full SHA for 67e276c

• Added TODO's for what tests to write

  TheCedarPrince

  committed
  be60895

  Copy full SHA for be60895

• Removed type signatures and added TODO for futures

  TheCedarPrince

  committed
  b05f4a5

  Copy full SHA for b05f4a5

• Removed type signatures

  TheCedarPrince

  committed
  7fb55e7

  Copy full SHA for 7fb55e7

• Removed type signatures

  TheCedarPrince

  committed
  564d9e9

  Copy full SHA for 564d9e9

Commits on Aug 3, 2022

• Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this

  TheCedarPrince

  committed
  b5100e0

  Copy full SHA for b5100e0

• Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits

  TheCedarPrince

  committed
  aa9bbc8

  Copy full SHA for aa9bbc8

• Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports

  TheCedarPrince

  committed
  df26222

  Copy full SHA for df26222

• Added and updated CHANGELOG

  TheCedarPrince

  committed
  f77547b

  Copy full SHA for f77547b

• Bumped project version numbers for new release

  TheCedarPrince

  committed
  a7238a9

  Copy full SHA for a7238a9

• Removed as it was an early testing prototype file

  TheCedarPrince

  committed
  b960d17

  Copy full SHA for b960d17

Commits on Aug 5, 2022

• Merge branch 'dev'

  TheCedarPrince

  committed
  77855bf

  Copy full SHA for 77855bf

• Began revising tutorial documentation

  TheCedarPrince

  committed
  c83835c

  Copy full SHA for c83835c

• Removed Manifest file for package

  TheCedarPrince

  committed
  76ccd9e

  Copy full SHA for 76ccd9e

• Added Dates and TimeZones deps for managing age groups

  TheCedarPrince

  committed
  62bd9d8

  Copy full SHA for 62bd9d8

• Disallowed some exports and created new function for generating defaults

  TheCedarPrince

  committed
  c968798

  Copy full SHA for c968798

• Added new deps Dates and TimeZones for time management

  TheCedarPrince

  committed
  ac7862e

  Copy full SHA for ac7862e

• Began refactoring of GetPatientAgeGroup

  TheCedarPrince

  committed
  a50b1e2

  Copy full SHA for a50b1e2

• Refactored GetPatientAgeGroup to correctly get age group of patients

  TheCedarPrince

  committed
  06dd9ab

  Copy full SHA for 06dd9ab

• Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings

  TheCedarPrince

  committed
  79441f3

  Copy full SHA for 79441f3

Commits on Aug 7, 2022

• Added SampleData compat and dependency

  TheCedarPrince

  committed
  5a4218a

  Copy full SHA for 5a4218a

• Renamed files and fixed docs

  TheCedarPrince

  committed
  0b90d2b

  Copy full SHA for 0b90d2b

• Fixed documentation and fixed methods for calculating age

  TheCedarPrince

  committed
  4188193

  Copy full SHA for 4188193

• Added helper function to determine year

  TheCedarPrince

  committed
  7c3cb31

  Copy full SHA for 7c3cb31

• Started adding first batch of tests

  TheCedarPrince

  committed
  7c041c7

  Copy full SHA for 7c041c7

• Added helpers file

  TheCedarPrince

  committed
  9e4ce81

  Copy full SHA for 9e4ce81

Commits on Aug 8, 2022

• Removed entry for SampleHealthData until merge of package occurs

  TheCedarPrince

  committed
  8d63857

  Copy full SHA for 8d63857

• Converted this function to internal helper function

  TheCedarPrince

  committed
  e631492

  Copy full SHA for e631492

• Added new tests and dependencies

  TheCedarPrince

  committed
  348a290

  Copy full SHA for 348a290

• Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs

  TheCedarPrince

  committed
  eb5c8cf

  Copy full SHA for eb5c8cf

• Added ignore for various Julia artifacts

  TheCedarPrince

  committed
  de480a9

  Copy full SHA for de480a9

• Initial drafting of full tutorial

  TheCedarPrince

  committed
  4559b62

  Copy full SHA for 4559b62

• Merge branch '0.1.0' into docs

  TheCedarPrince

  committed
  444e7d4

  Copy full SHA for 444e7d4

• Finished initial beginner tutorial

  TheCedarPrince

  committed
  f2879a0

  Copy full SHA for f2879a0

• Updated README with badges and documentation link

  TheCedarPrince

  committed
  4c3968c

  Copy full SHA for 4c3968c

• Modified footer

  TheCedarPrince

  committed
  b4a3291

  Copy full SHA for b4a3291

• Updated landing page

  TheCedarPrince

  committed
  1061eda

  Copy full SHA for 1061eda

• Reordered pages on sidebar

  TheCedarPrince

  committed
  fd0f974

  Copy full SHA for fd0f974

• Updated changelog for new release

  TheCedarPrince

  committed
  8bd33dc

  Copy full SHA for 8bd33dc

Commits on Sep 13, 2022

• Beginning draft of submission

  TheCedarPrince

  committed
  449c788

  Copy full SHA for 449c788

• Creating header affiliations

  TheCedarPrince

  committed
  07c47cc

  Copy full SHA for 07c47cc

• Autogenerated or compiled files

  TheCedarPrince

  committed
  5926070

  Copy full SHA for 5926070

• Ruby routine for generating header.tex

  TheCedarPrince

  committed
  e53b586

  Copy full SHA for e53b586

• Removed Memoization dependency for user flexibility

  TheCedarPrince

  committed
  4c35047

  Copy full SHA for 4c35047

Commits on Sep 14, 2022

• Added dispatches to render SQL; found bug in GetPatientAgeGroup

  TheCedarPrince

  committed
  2879630

  Copy full SHA for 2879630

Commits on Sep 21, 2022

• Added get function for ethnicity

  TheCedarPrince

  committed
  17a91c3

  Copy full SHA for 17a91c3

Commits on Oct 12, 2022

• Cherry picking some files to resolve conflicts

  TheCedarPrince

  committed
  35c457b

  Copy full SHA for 35c457b

• Merge branch 'main' into dev

  TheCedarPrince

  committed
  bacba83

  Copy full SHA for bacba83

• Initial Tests for Getters, Filters, and Executors (#24)

  Show description for da3e5f2
  

  3 peopleauthored
  da3e5f2

  Copy full SHA for da3e5f2

Commits on Oct 18, 2022

• Began process of major refactor to enable SQL rendering

  TheCedarPrince

  committed
  ba0a93e

  Copy full SHA for ba0a93e

Commits on Oct 19, 2022

• Simplify Age Calculations (#27)

  Show description for 419c768
  TheCedarPrince

  authored
  419c768

  Copy full SHA for 419c768

Commits on Oct 23, 2022

• Updated tests for helper functions

  TheCedarPrince

  committed
  8cb40d9

  Copy full SHA for 8cb40d9

• Added Additional Test Coverage for Getters and Helpers (#28)

  Show description for 796f7b1
  TheCedarPrince

  authored
  796f7b1

  Copy full SHA for 796f7b1

• Fix to Docs Deployment (#29)

  Show description for 94e52f3
  TheCedarPrince

  authored
  94e52f3

  Copy full SHA for 94e52f3

• Update to Beginner Tutorial and Minor Refactor of Tutorials Layout (#30)

  Show description for 70146eb
  TheCedarPrince

  authored
  70146eb

  Copy full SHA for 70146eb

Commits on Oct 24, 2022

• Overhaul of Docs (#31)

  Show description for 60cf9ac
  TheCedarPrince

  authored
  60cf9ac

  Copy full SHA for 60cf9ac

• Updated and fixed Citation file (#32)

  TheCedarPrince

  authored
  8b1707c

  Copy full SHA for 8b1707c

Commits on Nov 5, 2022

• Expanded CI to test on Windows & OSX and Julia Versions 1, Nightly, and LTS (#35)

  Show description for e4218dc
  

  3 peopleauthored
  e4218dc

  Copy full SHA for e4218dc

• Merge branch 'main' into dev

  TheCedarPrince

  authored
  32fe5d4

  Copy full SHA for 32fe5d4

Commits on Nov 6, 2022

• Added function to get place of service information (#39)

  Show description for 5341bca
  TheCedarPrince

  authored
  5341bca

  Copy full SHA for 5341bca

• Added GetVisitConcept getter function (#41)

  TheCedarPrince

  authored
  7c6e333

  Copy full SHA for 7c6e333

Commits on Feb 22, 2023

• issue #44 add GetVisitDate (#45)

  Show description for e0341a4
  

  3 peopleauthored
  e0341a4

  Copy full SHA for e0341a4

Commits on Feb 25, 2023

• Adding the column name (#43)

  Show description for 06af0cd
  

  4 peopleauthored
  06af0cd

  Copy full SHA for 06af0cd

Commits on Feb 28, 2023

• Bumped compat and release version

  TheCedarPrince

  committed
  22f5e48

  Copy full SHA for 22f5e48

• Updated CHANGELOG for new release

  TheCedarPrince

  committed
  57f9a8a

  Copy full SHA for 57f9a8a

• Bumped release version

  TheCedarPrince

  committed
  e0a20e5

  Copy full SHA for e0a20e5

• Merge branch 'main' into dev

  TheCedarPrince

  authored
  e3fd1ce

  Copy full SHA for e3fd1ce

Commits on Oct 26, 2023

• Resolve merge conflicts

  TheCedarPrince

  committed
  fff44e6

  Copy full SHA for fff44e6

• Added GetVisitProcedure associated with someones visit (#59)

  Show description for c0df24d
  

  6 peopleauthored
  c0df24d

  Copy full SHA for c0df24d

• Resolving ExecuteAudit function getting Breaked Easily (#60)

  Show description for abd9f5c
  Jay-sanjay

  authored
  abd9f5c

  Copy full SHA for abd9f5c

Commits on Nov 11, 2023

• renamed to GetDrugExposureIDs (#63)

  Show description for 5a0a09a
  

  Jay-sanjay

  and

  TheCedarPrince

  authored
  5a0a09a

  Copy full SHA for 5a0a09a

Commits on Nov 24, 2023

• Creating Queries That Return Cohort Information (#61)

  Show description for 3200fd1
  

  Jay-sanjay

  and

  TheCedarPrince

  authored
  3200fd1

  Copy full SHA for 3200fd1

Commits on Jan 15, 2024

• Merge with latest release

  TheCedarPrince

  committed
  df10325

  Copy full SHA for df10325

• Added GetDrugExposureEndDate function (#71)

  Show description for 15b8500
  Jay-sanjay

  authored
  15b8500

  Copy full SHA for 15b8500

Commits on Jan 25, 2024

• Added GetDrugExposureStartDate function (#72)

  Show description for bd6739f
  

  Jay-sanjay

  and

  TheCedarPrince

  authored
  bd6739f

  Copy full SHA for bd6739f

Commits on Feb 21, 2024

• Added a better Default for GetPatientAgeGroup (#75)

  Show description for 824afbe
  

  Jay-sanjay

  and

  TheCedarPrince

  authored
  824afbe

  Copy full SHA for 824afbe

Commits on Feb 22, 2024

• Bumped compat entry for FunSQL

  TheCedarPrince

  committed
  dd7254e

  Copy full SHA for dd7254e

• updates for new release

  Jay-sanjay

  authored
  678f7d2

  Copy full SHA for 678f7d2