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bergsalex wants to merge 96 commits into from
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Task/add GitHub actions #64

bergsalex wants to merge 96 commits into from

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@bergsalex
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@bergsalex bergsalex commented Aug 14, 2025

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bergsalex added 30 commits May 30, 2025 14:52
@bergsalex
Adding pyproject.toml and src structure outline
7b5c26b
@bergsalex
applying ruff formatting
a850417
@bergsalex
Adding tests for new CLI interface
f5144b1
@bergsalex
Cleanup of cli implementation from testing
17ca46a
@bergsalex
Adding pytest and uv lock
46131a4
@bergsalex
Removing tests directory from gitignore
679a316
@bergsalex
Adding new CLI definitions for all inference commands
04ebb2f
@bergsalex
Merge pull request #36 from KumarLabJax/YODA-128-build-new-cli-module…
4a9472c 
…-for-mouse-tracking-runtime

Yoda 128 build new cli module for mouse tracking runtime
@bergsalex
Automatic formatting
b9cb119
@bergsalex
Code comment cleanup
1e7de81
@bergsalex
Cleanup tests
77f7da3
@bergsalex
Merge pull request #37 from KumarLabJax/YODA-128-build-new-cli-module…
9e204f8 
…-for-mouse-tracking-runtime

Implement the CLI interfaces for infer CLI commands.
@bergsalex
Merge remote-tracking branch 'origin' into repository-reorganization
1272649
@bergsalex
Renaming root package to
99a1cb4
@bergsalex
Updating root __version__ and pyproject.toml package references
45bcfd3
@bergsalex
Merge pull request #41 from KumarLabJax/shorten-package-name
f05887c 
Shorten package name
@bergsalex
Refactoring pose utilities and adding tests
e00152b
@bergsalex
Adding two missed test files
aa5fa6d
@bergsalex
Moving all non top-level code files into the src directory and fixing…
50b331c 
… imports
@bergsalex
Adding typing to array utils
be32b3f
@bergsalex
Merge pull request #42 from KumarLabJax/refactor-pose-utils
39318e6 
Refactoring pose utilities and adding tests
@bergsalex
Merge pull request #43 from KumarLabJax/move-non-top-level-files
182b331 
Move all code files that aren't top level files
@bergsalex
Adding tests for pose inspect, and adding to CLI
3d9090d
@bergsalex
Fixing imports for CLI modules
3f32045
@bergsalex
Adding inspect functions to pose.inspect module
b020b86
@bergsalex
Switch pose inspect functions to use dict literal syntax
b34500c
@bergsalex
Specifying tf torch and jax related dependencies and updating lock file
26e1217
@bergsalex
Merge remote-tracking branch 'origin/fix-tf-pytorch-jax-dependencies'…
a524c07 
… into migrate-remaining-commands
@bergsalex
Merge pull request #44 from KumarLabJax/implement-single-pose-qa
9d178de 
Implement single pose qa
@bergsalex
Adding pose converter functions with tests
2fff3f5
bergsalex added 29 commits August 5, 2025 11:07
@bergsalex
Apply formatting fixes to matching code and tests
9ec24e1
@bergsalex
Merge remote-tracking branch 'origin/repository-reorganization' into …
8f08d80 
…improve-generate-tracklets-performance
@bergsalex
Removing commented out class definition
1957ec5
@bergsalex
Merge pull request #57 from KumarLabJax/improve-generate-tracklets-pe…
3283eeb 
…rformance

Lint and Format fixes for `matching` code and tests.
@bergsalex
Merge remote-tracking branch 'origin/main' into repository-reorganiza…
c99ccd8 
…tion
@bergsalex
Adding PR verification action
988f9eb
@bergsalex
Testing docker image build
d4ba198
@bergsalex
Testing node cleanup
15f78a8
@bergsalex
Debug image size
34aaff3
@bergsalex
Testing GCP Cloud Build
11ae9b6
@bergsalex
Docker build in github with custom base image
abf0670
@bergsalex
Fix uv python location in Dockerfile
14791c4
@bergsalex
Refactor github actions and split test and lint dev dependencies
1113b3c
@bergsalex
Fix optional workflow call inputs
b753929
@bergsalex
Limit dependency install to lint only on format-lint action
a7b096e
@bergsalex
Update singularity and docker images to remove Google Colab dependency
a45ddd2
@bergsalex
Apply automated ruff check fixes
8b4d774
@bergsalex
Apply ruff auto-formatting
db4aa5b
@bergsalex
Merge pull request #66 from KumarLabJax/YODA-220-fix-mouse-tracking-r…
b0cd05f 
…untime-format-lint-errors-to-allow-github-actions-steps-to-pass

Yoda 220 Automated Fixes for Formatting/Linting Errors
@bergsalex
Manual fixes for ruff linting errors
45c3133
@bergsalex
Merge remote-tracking branch 'origin/repository-reorganization' into …
e71c501 
…YODA-220-fix-mouse-tracking-runtime-format-lint-errors-to-allow-github-actions-steps-to-pass
@bergsalex
Fix description of CLI per-file lint ignore
a749f69
@bergsalex
Adding auto-formatting for manually changed files
e40b935
@bergsalex
Merge pull request #67 from KumarLabJax/YODA-220-fix-mouse-tracking-r…
6dbd9f0 
…untime-format-lint-errors-to-allow-github-actions-steps-to-pass

Yoda 220 Manual Fixes for Linting Errors
@bergsalex
Adding newline at end of Dockerfile
6eab176
@bergsalex
Merge remote-tracking branch 'origin/repository-reorganization' into …
f0b8141 
…task/add-github-actions
@bergsalex
Revise vm/README language, update base image CUDE to match pyproject.…
3f01a97 
…toml (cu126)
@bergsalex
Merge remote-tracking branch 'origin/YODA-217-update-mouse-tracking-r…
36c90ca 
…untime-singularity-image' into task/add-github-actions
@bergsalex
Temporarily enable PR action on merges to repository-reorganizatiom b…
d096b61 
…ranch.
@bergsalex bergsalex closed this Aug 19, 2025
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@bergsalex