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Klaus 267 compression resource config #82

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Merged
SkepticRaven merged 2 commits into from
Sep 18, 2025
Merged

Klaus 267 compression resource config #82

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6068827
Changing preset to veryfast
SkepticRaven Sep 17, 2025
ffe680d
Organizing resource tags and values for compression appropriately
SkepticRaven Sep 17, 2025
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9 changes: 9 additions & 0 deletions nextflow/configs/profiles/sumner2.config
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Original file line number Diff line number Diff line change
Expand Up @@ -540,6 +540,15 @@ process {
errorStrategy = { task.attempt <= 3 ? 'retry' : 'ignore' }
maxRetries = 3
}
withLabel: "r_compression" {
// Note: These resources are enough for 1-hour 800x800 videos.
// TODO: These values should scale to duration and size of video.
cpus = 2
memory = 2.GB
time = 2.hours
array = 200
errorStrategy = 'ignore'
}
}

executor {
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14 changes: 11 additions & 3 deletions nextflow/modules/compression.nf
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Expand Up @@ -9,7 +9,10 @@
* @return file Path to compressed video
*/
process COMPRESS_VIDEO_CRF {
label "compression"
label "cpu"
// Any environment with ffmpeg installed should work here.
label "tracking"
label "r_compression"

input:
tuple path(video_file), val(crf), val(keyframe_interval)
Expand All @@ -19,7 +22,7 @@ process COMPRESS_VIDEO_CRF {

script:
"""
ffmpeg -i ${video_file} -c:v libx264 -pix_fmt yuv420p -preset slow -crf ${crf} -g ${keyframe_interval} -f mp4 ${video_file.baseName}_g${keyframe_interval}_crf${crf}.mp4
ffmpeg -i ${video_file} -c:v libx264 -pix_fmt yuv420p -preset veryfast -crf ${crf} -g ${keyframe_interval} -f mp4 ${video_file.baseName}_g${keyframe_interval}_crf${crf}.mp4
"""
}

Expand All @@ -38,7 +41,10 @@ process COMPRESS_VIDEO_CRF {
* @note COMPRESS_VIDEO_CRF will typically produce better videos with a low signal-to-noise ratio.
*/
process COMPRESS_VIDEO_BR {
label "compression"
label "cpu"
// Any environment with ffmpeg installed should work here.
label "tracking"
label "r_compression"

input:
tuple path(video_file), val(bitrate), val(keyframe_interval)
Expand Down Expand Up @@ -66,6 +72,8 @@ process COMPRESS_VIDEO_BR {
* @note Difference videos are useful in comparing changes due to compression.
*/
process COMPUTE_VIDEO_DIFFERENCE {
label "cpu"
// Any environment with ffmpeg installed should work here.
label "tracking"

input:
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