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Releases: LiaOb21/colora

v_1.1.1 - Olia

14 May 14:44
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Upgraded packages

Package v_1.0.0 v_1.1.0 v_1.1.1
bwa 0.7.17 0.7.18 0.7.19
samtools 1.19 1.20 1.21
picard 2.18.7 3.2.0 3.4.0
bandage 0.8.1 -- 0.9.0
busco 5.7.0 5.7.1 5.8.3
fastp 0.23.4 -- 0.24.1
fcsgx 0.5.0 0.5.4 0.5.5
gfastats 1.3.6 -- 1.3.11
hifiasm 0.19.8 0.19.9 0.25.0
nanoplot 1.42.0 1.43.0 1.44.1
quast 5.2.0 -- 5.3.0
yahs 1.2a.2 -- 1.2.2

v_1.1.0 - Aghina

14 Aug 13:19
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Improvements

  • It's now possible to set optional parameters for BUSCO

Upgraded packages

Package v_1.0.0 v_1.1.0
bwa 0.7.17 0.7.18
samtools 1.19 1.20
picard 2.18.7 3.2.0
busco 5.7.0 5.7.1
ncbi-fcsgx 0.5.0 0.5.4
genomescope2 2.0 2.0.1
hifiasm 0.19.8 0.19.9
kmc 3.2.1 3.2.4
nanoplot 1.42.0 1.43.0

v_1.0.0 - Melagrenada

17 May 10:15
52adff6
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Improvements

  • Colora now allows phased assembly
  • Assembly quality assessment with BUSCO and QUAST was added
  • Organelles quality check with gfastats and bandage added
  • No more empty logs
  • Test dataset available

Comments

  • Tested with several datasets and using several systems

Ready_for_testing

29 Feb 17:03
a3fb88b
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Ready_for_testing Pre-release
Pre-release

Pre-release of colora. Ready for testing. Few things to be still implemented.