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When running DIA data generated on a QExactive I get the following error after initializing the RawFileManager
ERROR: Please check if this is a valid DIA data set.
- This could be DDA data?
- Is it DIA data where the order of windows is not the same in each cycle?
- Might be due to DIA data where the cycle does not start at beginning of file but e.g. only after a series of blank scans.
AlphaDIA has a strict definition of DIA cycles: same order of scans within a cycle and the cycle must appear throughout the whole file without gaps.
I have checked the raw files and found a consistent cycle and no blank scans
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