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Notebook wont run with current version of AlphaDIA in development mode

Status: Open.

Bug

#570 In MannLabs/alphadia;

· mlorenz49 opened on Jun 12, 2025

Inconsistent precursor reporting when setting error > 200 ppm

Status: Open.

Task

#569 In MannLabs/alphadia;

· mlorenz49 opened on Jun 12, 2025

Not Valid DIA data error

Status: Open.

#566 In MannLabs/alphadia;

· jbettinger91 opened on Jun 6, 2025

Inconsistent low precursor identification in one of set of runs

Status: Open.

#564 In MannLabs/alphadia;

· rodvrees opened on Jun 5, 2025

AlphaDIA sometimes returns empty pg.matrix.tsv when searching with very small libraries

Status: Open.

#432 In MannLabs/alphadia;

· vbrennsteiner opened on Jan 16, 2025

Introduce 2-step classifier in alphaDIA scoring

enhancementNew feature or requestNew feature or request

Status: Open.

#397 In MannLabs/alphadia;

· anna-charlotte opened on Dec 10, 2024

Multiplexing not working with library prediction

bugSomething isn't workingSomething isn't working

Status: Open.

#395 In MannLabs/alphadia;

· timheymann opened on Dec 9, 2024

multiplexDIA

Status: Open.

#385 In MannLabs/alphadia;

· Kokoushin opened on Nov 26, 2024

diaPasef: No objects to concatenate

bugSomething isn't workingSomething isn't working

Status: Open.

#383 In MannLabs/alphadia;

· rednaSander opened on Nov 25, 2024

spectral library formats

Status: Open.

#376 In MannLabs/alphadia;

· GeorgWa opened on Nov 16, 2024

rquantify doesn't use column choice from extraction

bugSomething isn't workingSomething isn't working

Status: Open.

#353 In MannLabs/alphadia;

· GeorgWa opened on Sep 17, 2024

GPU is not used for transfer learning although use_gpu: true

bugSomething isn't workingSomething isn't working

Status: Open.

#286 In MannLabs/alphadia;

· machth opened on Jul 25, 2024