projectx-2021

Bioconductor

Use r/bioconductor to fetch RNA-seq data per Ramirez et al.
It runs in a docker container as configured in docker-compose.yml
Install docker, docker-compose, and run docker-compose up to start the r/bioconductor container
- Make sure the docker daemon is running
- Recommend to install Docker Desktop
  - When the Docker Desktop is running, the daemon should be up
Go to localhost:8787 to login to RStudio
- Username is rstudio
- Password is bioc
The ~/projectx-2021 directory of the container maps to ./r of this project

Name		Name	Last commit message	Last commit date
Latest commit History 28 Commits
.github/workflows		.github/workflows
gnn		gnn
notebooks		notebooks
projectx		projectx
protbert		protbert
r		r
scripts		scripts
testing		testing
.gitignore		.gitignore
README.md		README.md
docker-compose.yml		docker-compose.yml
environment.yml		environment.yml
poetry.lock		poetry.lock
pyproject_old.toml		pyproject_old.toml
setup.py		setup.py