Protein sequence data

[dufaultc]

From uniprot.org, will be to initialize node vectors of our graph neural network.

Information Needed

• Source of data
• Where data is located
• Description of data

[DanDiCesare]

Current implementation in graph.py queries uniprot based on the StringDB id. Validation/compatibility with co-expression data still needs to be tested.

Source of data: uniprot.org using bioservices
Where data is located: currently generated during runtime of graph creation
Description of data: FASTA sequence is pulled from uniprot and further processed into a tokenizable form for ProtBert.