Protein-protein interaction data

[dufaultc]

From string-db.org, will be used for constructing gene-gene edges of our graph.

Information Needed

• Source of data
• Where data is located
• Description of data

[DanDiCesare]

Addressed in string_db_pull.py

Source of data: string-db.org (protein links full)
Where data is located: ./Corpuses after running
Description of data: JSON format, each protein is linked to an associated protein along with relevant scoring/distances.

Example:

"9606.ENSP00000000233": {
        "protein2": "9606.ENSP00000361716",
        "neighborhood": "0",
        "neighborhood_transferred": "0",
        "fusion": "0",
        "cooccurence": "0",
        "homology": "0",
        "coexpression": "0",
        "coexpression_transferred": "62",
        "experiments": "0",
        "experiments_transferred": "212",
        "database": "0",
        "database_transferred": "0",
        "textmining": "0",
        "textmining_transferred": "85",
        "combined_score": "264"
    },