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Code for automatically detecting putative somata

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mouselight_toolbox @ 37810ca
mouselight_toolbox @ 37810ca
 
 
tmt @ e1c8ce8
tmt @ e1c8ce8
 
 
.gitignore
.gitignore
 
 
.gitmodules
.gitmodules
 
 
LICENSE.txt
LICENSE.txt
 
 
README.txt
README.txt
 
 
_driver_script.sh
_driver_script.sh
 
 
calc_analysis_chunk_for_ROI.m
calc_analysis_chunk_for_ROI.m
 
 
compute_derived_component_features.m
compute_derived_component_features.m
 
 
count_voxels_per_component.m
count_voxels_per_component.m
 
 
debug_on_substack.m
debug_on_substack.m
 
 
debug_on_substack_around_target_13.m
debug_on_substack_around_target_13.m
 
 
debug_on_substack_with_many_somata.m
debug_on_substack_with_many_somata.m
 
 
detail_plots_for_2020_02_03_data_meeting.m
detail_plots_for_2020_02_03_data_meeting.m
 
 
find-somata-2019-12-25-round-1.out.txt
find-somata-2019-12-25-round-1.out.txt
 
 
find_candidate_somata_in_uint16_stack.m
find_candidate_somata_in_uint16_stack.m
 
 
find_min_matrix_element.m
find_min_matrix_element.m
 
 
find_somata.m
find_somata.m
 
 
find_somata_2019_08_08.m
find_somata_2019_08_08.m
 
 
find_somata_2019_09_06_v1.m
find_somata_2019_09_06_v1.m
 
 
find_somata_2019_12_25.m
find_somata_2019_12_25.m
 
 
find_somata_2020_01_13.m
find_somata_2020_01_13.m
 
 
find_somata_2020_01_13_v1.m
find_somata_2020_01_13_v1.m
 
 
find_somata_2020_01_13_v2.m
find_somata_2020_01_13_v2.m
 
 
find_somata_2020_01_13_vtf.m
find_somata_2020_01_13_vtf.m
 
 
find_somata_2020_01_23.m
find_somata_2020_01_23.m
 
 
find_somata_2020_01_23_v3.m
find_somata_2020_01_23_v3.m
 
 
find_somata_2020_02_24_v1.m
find_somata_2020_02_24_v1.m
 
 
find_somata_2020_02_24_v2.m
find_somata_2020_02_24_v2.m
 
 
find_somata_2020_04_15.m
find_somata_2020_04_15.m
 
 
find_somata_2020_09_15.m
find_somata_2020_09_15.m
 
 
find_somata_2020_09_15_debug.m
find_somata_2020_09_15_debug.m
 
 
find_somata_2020_09_15_v2.m
find_somata_2020_09_15_v2.m
 
 
find_somata_2020_12_31_new_v1.m
find_somata_2020_12_31_new_v1.m
 
 
find_somata_2020_12_31_new_v2.m
find_somata_2020_12_31_new_v2.m
 
 
find_somata_2020_12_31fast.m
find_somata_2020_12_31fast.m
 
 
find_somata_2021_09_16.m
find_somata_2021_09_16.m
 
 
find_somata_2022_04_25.m
find_somata_2022_04_25.m
 
 
find_somata_2022_04_25_v2.m
find_somata_2022_04_25_v2.m
 
 
load_gt.m
load_gt.m
 
 
load_soma_targets.m
load_soma_targets.m
 
 
load_somata_xyzs_from_swc_files.m
load_somata_xyzs_from_swc_files.m
 
 
load_targets.m
load_targets.m
 
 
load_traceable_soma_targets_from_tracers.m
load_traceable_soma_targets_from_tracers.m
 
 
match_targets_and_components.m
match_targets_and_components.m
 
 
match_targets_and_guesses.m
match_targets_and_guesses.m
 
 
modpath.m
modpath.m
 
 
overview_plots_for_2020_02_03_data_meeting.m
overview_plots_for_2020_02_03_data_meeting.m
 
 
pad_and_find_candidate_somata.m
pad_and_find_candidate_somata.m
 
 
pad_and_find_candidate_somata_then_save.m
pad_and_find_candidate_somata_then_save.m
 
 
playground.m
playground.m
 
 
plots_for_2020_02_03_data_meeting.m
plots_for_2020_02_03_data_meeting.m
 
 
print_performace_statistics_and_plot.m
print_performace_statistics_and_plot.m
 
 
process_full_stack_on_cluster.m
process_full_stack_on_cluster.m
 
 
process_full_stack_on_cluster_and_compare_to_tracer_gt.m
process_full_stack_on_cluster_and_compare_to_tracer_gt.m
 
 
process_one_analysis_chunk.m
process_one_analysis_chunk.m
 
 
target_13_playground.m
target_13_playground.m
 
 
test_on_substack.m
test_on_substack.m
 
 
times.txt
times.txt
 
 

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This is a quick-and-dirty soma detector used by the MouseLight project
at various times.

Copyright 2023 by the Howard Hughes Medical Institute.

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Code for automatically detecting putative somata

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