Increase file size limit from 5GB to 50GB

CHANGELOG.md

@@ -1,5 +1,9 @@
 # multiqc-xenium-extra changelog
 
+## v1.0.2 [2025-12-10]
+
+Increase file size limit from 5GB to 50GB to handle larger Xenium files.
+
 ## v1.0.1 [2025-10-25]
 
 Move over some additional code from core MultiQC that

CLAUDE.md

@@ -32,7 +32,7 @@ multiqc /path/to/xenium/data
 
 The plugin uses MultiQC's hook system (v1) to extend functionality:
 
-- **`xenium_extra_execution_start`**: Called at startup to register search patterns for `transcripts.parquet`, `cells.parquet`, and `cell_feature_matrix.h5` files, and increase file size limit to 5GB.
+- **`xenium_extra_execution_start`**: Called at startup to register search patterns for `transcripts.parquet`, `cells.parquet`, and `cell_feature_matrix.h5` files, and increase file size limit to 50GB.
 
 - **`extend_xenium_module`**: Called after the core Xenium module runs, receives the module instance and adds extra sections/data.
 

README.md

@@ -29,7 +29,7 @@ pip install multiqc-xenium-extra
 The plugin automatically adjusts the file size limit to handle large Xenium files:
 
 ```yaml
-log_filesize_limit: 5000000000 # 5GB
+log_filesize_limit: 50000000000 # 50GB
 ```
 
 ## Usage

multiqc_xenium_extra/xenium_extra.py

@@ -76,9 +76,9 @@ def xenium_extra_execution_start():
 
     # Increase file size limit to handle large Xenium files (if not already set by user)
     # Default is 50MB, Xenium files can be several GB
-    if config.log_filesize_limit < 5000000000:  # 5GB
-        log.debug("Increasing log_filesize_limit to 5GB for Xenium parquet files")
-        config.log_filesize_limit = 5000000000
+    if config.log_filesize_limit < 50000000000:  # 50GB
+        log.debug("Increasing log_filesize_limit to 50GB for Xenium parquet files")
+        config.log_filesize_limit = 50000000000
 
 
 # Extension function and helper functions below

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "multiqc_xenium_extra"
-version = "1.0.1"
+version = "1.0.2"
 authors = [
     {name = "Phil Ewels", email = "[email protected]"},
 ]