skm-pss-adapters

Export adapters from PSS neo4j db to other (flatfile) formats

SBML:

Create environemnt with dependencies:

mamba create -n pss-sbml conda-forge::neo4j-python-driver conda-forge::python-libsbml conda-forge::pyyaml conda-forge::click

Create the SBML file using the CLI:

python pss_adapter_cli.py to-sbml output.sbml --access public --neo4j-uri bolt://heron:7687