v1.9 - Protenix Integration & Enhanced Predictions

• Changes:
  • Optimized test data generation and request handling with enhanced error handling.
  • Added an optional seq2 parameter to PredictRequest and updated the predict function.
  • Improved task validation and error handling in the predict function.
  • Switched to Protenix, removed ESM3, and updated model configurations.
  • Added accelerate>=0.26.0 to requirements and bumped Protenix to version 0.3.6.
  • Enhanced ProtModel with JSON handling, B-factor preservation, and added a new test script.
  • Allowed optional name in PredictRequest model and fixed device string formatting in ProtModel initialization.
  • Added Protenix support and improved model initialization.

Full Changelog: v1.8...v1.9

v1.8 - sc-TMScore & PDB Enhancements

• Changes:
  • Updated README with details on sc-tmscore, pdb, and the seq2 field.
  • Added sc-tmscore and pdb to type selection in generate_test_data.
  • Enhanced model management and task handling with added docstrings.
  • Extended PredictTask to include sc-tmscore and pdb, and refined _predict_structure and _downstream_task.
  • Added name_seq_map to backbone_pdb and improved to_pdb.py.
  • Added a TODO section for sc-tmscore and pdb examples in the README.

Full Changelog: v1.7...v1.8

v1.7 - Smarter Scheduling & Hybrid GPU Mode

• Changes:
  • Refined model scheduling using a conditional sorted heap for better workload distribution.
  • Improved logging, added task priority, and refactored task handling with re-insertion logic.
  • Added GPU+API hybrid mode for ESMFold, updated .gitignore, and refactored model code.
  • Introduced rate limiting, model status tracking, and non-blocking model fetch.

Full Changelog: v1.6...v1.7

v1.6 - Global Model Index & Logging Boost

• Changes:
  • Refactored the working pool to a dictionary and changed the model index to a global index.
  • Fixed a bug related to the time module import and enhanced logging.

Full Changelog: v1.5...v1.6

v1.5 - Rate Limiting & Model Status Tracking

• Changes:
  • Added GPU+API hybrid mode for ESMFold and refactored model code.
  • Introduced rate limiting, model status tracking, and non-blocking model fetch.
  • Added Hugging Face ESMFold support, refactored model code, and updated paths.
  • Optimized server performance, added caching, and adjusted logging.

Full Changelog: v1.4...v1.5

v1.4 - Thread Safety & Caching

• Changes:
  • Separated locks and added an additional model-level logger for better debugging.
  • Added caching to reduce API calls and improve performance.

Full Changelog: v1.3...v1.4

v1.3 - ESMFold Support Added

• Changes:
  • Added support for ESMFold and refactored model code.

Full Changelog: v1.2...v1.3

v1.2.2 - Thread-Safe Operations

• Changes:
  • Used primitives to guarantee thread-safe operations.

Full Changelog: v1.2.1...v1.2.2

v1.2.1 - Bug Fix: Reverse Index

• Changes:
  • Fixed the reverse_index missing case.

Full Changelog: v1.2...v1.2.1

v1.2 - TMScore Fix & PDB Reconstruction

• Changes:
  • Fixed TMScore calculations to ensure reconstructed PDB files work the same as original PDB files.
  • Updated the README and refactored the predict function to prepare for TMScore and other metrics.
  • Made the server's async timeout interval configurable.
  • Reconstructed PDB from backbone test/validation coordinate data.

Full Changelog: v1.1...v1.2