- First steps rework #278
Merged
- First steps rework #278
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
PavelBal
commented
Aug 27, 2025
|
|
||
| To create your first MoBi® project, simply follow the steps described in the sections below. | ||
|
|
||
| ## Start the Program |
There was a problem hiding this comment.
No need to describe how to start an application..
There was a problem hiding this comment.
Pull Request Overview
This PR reworks the first-steps documentation for MoBi® to reflect significant changes in the application's interface and functionality. The documentation is updated to reflect a new modular approach and interface changes.
- Updates interface terminology from "Building Block Explorer" to "Modules Explorer" and related UI changes
- Replaces detailed step-by-step model creation tutorial with focus on importing PK-Sim® models and module-based workflow
- Streamlines content by removing extensive manual model building instructions in favor of referencing other documentation sections
Tip: Customize your code reviews with copilot-instructions.md. Create the file or learn how to get started.
PavelBal
commented
Aug 27, 2025
|
|
||
| In the following we describe some details of the different subviews. | ||
|
|
||
| The **Modeling & Simulation ribbon bar** is separated into the **History** group, **Create Building Blocks** group, the **Simulation** group, options for specific **Workflows** and the **Project** functionality that helps to manage and display the units of parameters. **Views** contains the selection of the basic windows in MoBi®, the building block explorer window, the simulation explorer, and the history manager window. |
There was a problem hiding this comment.
This was outdated, and I don't see a point of updating it.
Co-authored-by: Copilot <[email protected]>
Co-authored-by: Copilot <[email protected]>
Co-authored-by: Copilot <[email protected]>
Co-authored-by: Copilot <[email protected]>
PavelBal
commented
Aug 27, 2025
|
|
||
| The first step to start working with MoBi® is to create a new project. To do this, click on the **New Project** command in the File menu. You can either work with amount or concentration based reaction networks which needs to be specified when creating a new project. Empty building blocks are automatically created shortly after in the **Building Block Explorer**: Molecules, Reactions, Spatial Structures, Passive Transports, Observers, and Events. Some of these building blocks need to be filled with data, which is successively done in the next sections. | ||
|
|
||
| ## Enter Molecules |
There was a problem hiding this comment.
This whole example would not work because the description of creating the spatial structures is missing! I have extracted this example into a separate file here #277
It could be finalized and offered later. As I said, right now it is useless.
PavelBal
commented
Aug 27, 2025
| Congratulations, you have done your first simulation using MoBi®! | ||
| {% endhint %} | ||
|
|
||
| ## Running a PK-Sim® Simulation |
There was a problem hiding this comment.
Importing of a PK-Sim simulation is described above.
PavelBal
commented
Aug 27, 2025
| 7. In the Data Browser section of the chart editor, select the proper organ and compartment as in your PK-Sim® project, for example Peripheral Venous Blood, and then Plasma. Check the box  in the column "Used". A PK curve should appear; if all went right, the results displayed in MoBi® should be the same as displayed with your original PK-Sim® simulation. | ||
| 6. Click the orange arrow <img src="../assets/icons/Run.svg" data-size="line"> ribbon button to run the simulation, or alternatively press the **F5** key. | ||
|
|
||
| ## Exit MoBi® |
Yuri05
reviewed
Aug 28, 2025
|
The program overview image has to be updated as well. |
PavelBal
commented
Aug 28, 2025
Yuri05
approved these changes
Aug 28, 2025
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.