Initial model setup -- Converting SANDAG to ODOT

.github/workflows/ci.yml

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+name: CI Test for Cropped Example
+
+on:
+  push:
+    branches:
+      - '**'
+  pull_request:
+    branches:
+      - '**'
+
+jobs:
+  oregon_metro_mini_example:
+    env:
+      conda-env-prefix: /usr/share/miniconda3/envs/conda-abm_dev
+      label: linux-64
+    strategy:
+      matrix:
+        region:
+          - oregon_metro
+        python-version:
+          - "3.10"
+      fail-fast: false
+    defaults:
+      run:
+        shell: bash -l {0}
+
+    name: ${{ matrix.region }}-py${{ matrix.python-version }}
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v4
+
+      # Clone ActivitySim from SimOR_pnr branch
+      - name: Clone ActivitySim
+        run: |
+          cd ..
+          git clone --branch SimOR_pnr https://github.com/RSGInc/activitysim.git
+          pwd
+          tree -L 2
+
+      - name: Setup Miniforge
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          auto-update-conda: true
+          miniforge-version: latest
+          mamba-version: "2.0.5"
+          conda-solver: classic
+          conda-remove-defaults: true
+          environment-file: ../activitysim/conda-environments/github-actions-tests.yml
+          activate-environment: asim-test
+          python-version: ${{ matrix.python-version }}
+
+      # Install cloned fork of ActivitySim
+      - name: Install ActivitySim in editable mode
+        run: |
+          pwd
+          cd ../activitysim
+          python -m pip install -e . --no-deps
+          cd ..
+          cd SimOR
+          ls
+          conda info -a
+          conda list
+
+      # Run the test
+      - name: Run cropped example test
+        run: python resident/test/test_cropped_dataset.py

.gitignore

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+*__pycache__*
+.vscode/*
+resident/model_data/metro/data_full/*
+resident/outputs/*
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.cache
+nosetests.xml
+coverage.xml
+
+Metro_outputs/
+
+skimming_and_assignment/visum/*.ver

.vscode/launch.json

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+{
+    // Use IntelliSense to learn about possible attributes.
+    // Hover to view descriptions of existing attributes.
+    // For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
+    "version": "0.2.0",
+    "configurations": [
+        {
+            "name": "Run Full Example",
+            "type": "debugpy",
+            "request": "launch",
+            "cwd": "${workspaceFolder}/resident",
+            "program": "simulation.py",
+            "console": "integratedTerminal",
+            "args": [
+                "-c", "configs", // check the settings.yaml file for run settings!
+                "-d", "model_data/metro/data_full",
+                "-o", "outputs/full",
+            ]
+        },
+        {
+            "name": "Run Cropped Example",
+            "type": "debugpy",
+            "request": "launch",
+            "cwd": "${workspaceFolder}/resident",
+            "program": "simulation.py",
+            "console": "integratedTerminal",
+            "args": [
+                "-c", "configs", // check the settings.yaml file for run settings!
+                "-d", "model_data/metro/data_cropped",
+                "-o", "outputs/test",
+            ]
+        }
+    ]
+}

README.md

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 # SimOR
 Simulate Oregon (SimOR) - Oregon's Jointly Estimated ActivitySim Model
 ![image](SimOR.png)
+
+## Currently in development
+To run the prototype mini example, download and install the correct fork of Activitysim from [here](https://github.com/RSGInc/activitysim/tree/SimOR_pnr) and follow the launch commands in the .vscode/launch.json file.  This version of ActivitySim contains the necessary park-and-ride changes to run the SimOR model.

misc/bike_analysis/.gitignore

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+src/__pycache__/

misc/bike_analysis/scripts/01_clean.py

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+import pandas as pd
+import numpy as np
+import os
+pd.set_option('display.max_columns', None)
+os.chdir(os.path.dirname(os.path.dirname(__file__)))
+
+# %%
+# Directories
+data_dir = 'data'
+raw_dir = f'{data_dir}/raw'
+interim_dir = f'{data_dir}/interim'
+processed_dir = f'{data_dir}/processed'
+
+# %%
+# Load data
+hh = pd.read_csv(f'{raw_dir}/ex_hh.csv')
+# day = pd.read_csv(f'{raw_dir}/ex_day.csv')
+person = pd.read_csv(f'{raw_dir}/ex_person.csv')
+trips = pd.read_csv(f'{raw_dir}/ex_trip_unlinked.csv')
+ltrips = pd.read_csv(f'{raw_dir}/ex_trip_linked.csv')
+
+# %% Rename variables
+ltrips.rename(
+    columns=
+    {'linked_trip_weight': 'ltrip_weight'},
+    inplace=True
+)
+
+# Re-map values to labels
+person_mapping = {
+    'gender': {1: 'Female', 2: 'Male', 3:'Non-binary', 995:'Missing', 997:'Other', 999:'PNTA'},
+    'age': {1:'Under5', 2:'5-10', 3:'11-15', 4:'16-17', 5:'18-24', 6:'25-34', 7:'35-44', 8:'45-54', 9:'55-64', 10:'65-74', 11:'75-84', 12:'85plus'},
+    'bike_freq': {1: '6-7days', 2: '5days', 3: '4days', 4: '3days', 5: '2days',  6: '1day', 7: '1-3month', 8: '<1month', 996: 'Never', 995: 'Missing'},
+    'bike_attitude': {1:'PhysicallyUnable', 2:'DoesNotKnowHow', 3:'NotInterested', 4:'WantBikeLess', 5:'HappyWithCurrent', 6:'WantBikeMore', 995:'Missing'}
+}
+
+# Re-map to broader categories
+bike_freq_map = {
+    '6-7days': 'VeryFrequent',
+    '5days': 'VeryFrequent',
+    '4days': 'VeryFrequent',
+    '3days': 'Occasional',
+    '2days': 'Occasional',
+    '1day': 'Occasional',
+    '1-3month': 'Infrequent',
+    '<1month': 'Infrequent',
+    'Never': 'Never',
+    'Missing': 'Missing'
+}
+
+bike_att_bin = {
+    'PhysicallyUnable': 'NotInterestedCant',
+    'DoesNotKnowHow': 'NotInterestedCant',
+    'NotInterested': 'NotInterestedCant',
+    'WantBikeLess': 'WantBikeLess',
+    'HappyWithCurrent': 'HappyWithCurrent',
+    'WantBikeMore': 'WantBikeMore',
+    'Missing': 'Missing'
+}
+
+income_bin = {
+    1: 'Low',
+    2: 'Low',
+    3: 'Mid',
+    4: 'Mid',
+    5: 'High',
+    6: 'High',
+    995: 'Missing',
+    999: 'Missing'
+}
+
+income_num = {
+    1: 25000,
+    2: 37500,
+    3: 62500,
+    4: 87500,
+    5: 150000,
+    6: 200000,
+    995: np.nan,
+    999: np.nan
+}
+
+age_bin = {
+    'Under5': 'Under10',
+    '5-10': 'Under10',
+    '11-15': '10-17',
+    '16-17': '10-17',
+    '18-24': '18-34',
+    '25-34': '18-34',
+    '35-44': '35-64',
+    '45-54': '35-64',
+    '55-64': '35-64',
+    '65-74': '65+',
+    '75-84': '65+',
+    '85plus': '65+'
+}
+
+age_num = {
+    'Under5': 2.5,
+    '5_10': 8,
+    '11-15': 13,
+    '16-17': 16,
+    '18-24': 21,
+    '25-34': 30,
+    '35-44': 40,
+    '45-54': 50,
+    '55-64': 60,
+    '65-74': 70,
+    '75-84': 80,
+    '85plus': 85
+}
+
+person['gender_num'] = np.where(
+    person['gender'].isin([1,3,997]), 1, # Female & Others
+    np.where(person['gender'] == 2, 2, 3) # Male and Missing
+)
+person['gender_lab'] = person['gender'].map(person_mapping['gender'])
+person['gender_bin'] = person['gender_num'].map({1:'Female & Others', 2: 'Male', 3: 'Missing'})
+
+person['age_lab'] = person['age'].map(person_mapping['age'])
+person['age_bin'] = person['age_lab'].map(age_bin)
+person['age_num'] = person['age_lab'].map(age_num) 
+
+person['bike_freq_lab'] = person['bike_freq'].map(person_mapping['bike_freq'])
+person['bike_freq_bin'] = person['bike_freq_lab'].map(bike_freq_map)
+
+person['bike_att'] = person['bike_attitude'].map(person_mapping['bike_attitude'])
+person['bike_att_bin'] = person['bike_att'].map(bike_att_bin)
+
+hh['income_bin'] = hh['income_broad'].map(income_bin)
+hh['income_num'] = hh['income_broad'].map(income_num)
+
+# %%
+# Define comfort variable
+comfort_cols = [col for col in person.columns if 'bike_comfort' in col]
+likert_scale = {1:4, 2:3, 3:2, 4:1}  # Reverse scoring for comfort
+person[comfort_cols] = person[comfort_cols].replace(likert_scale)
+person['avg_comfort'] = person[comfort_cols].replace(995, pd.NA).mean(axis=1, skipna=True).fillna(0)
+comfort_labels = ['Uncomfortable', 'Comfortable']
+person['comfort_bin'] = np.where(
+    person['avg_comfort'] >= 3, 'Comfortable',
+    np.where(person['avg_comfort'] != 0 , 'Uncomfortable', pd.NA)
+)
+
+# %%
+# Identify complete rmove households (for comfort classification - 04_classify.py)
+print(f"Total households: {hh['hh_weight'].sum():,.2f}")
+
+hh_rmove = hh[hh['diary_platform'] == 'rmove']
+print(f"Total households with rmove: {hh_rmove['hh_weight'].sum():,.2f}")
+
+hh_rmove_complete = hh_rmove[hh_rmove['num_days_complete'] == 7]
+print(f"Total number of households with 7 complete days: {hh_rmove_complete['hh_weight'].sum():,.2f}")
+print(f"Total sample size of households with 7 complete days: {hh_rmove_complete.shape[0]:,}")
+
+bike_complete_hh_ids = hh_rmove_complete['hh_id'].unique().tolist()
+
+# Add flag to identify complete records
+person['bike_complete_flag'] = 0
+person.loc[person['hh_id'].isin(bike_complete_hh_ids), 'bike_complete_flag'] = 1
+
+# %% Merge bike trips with person table
+# Count bike trips
+bike_trip_mask = (ltrips['linked_trip_mode'] == 11)
+bike_trips= ltrips[bike_trip_mask].copy()
+bike_counts = bike_trips.groupby('person_id').size().reset_index(name='bike_trips')
+
+# Keep relevant cols
+per_cols = ['hh_id', 'person_id', 'age_lab', 'age_bin', 'age_num', 
+            'gender_bin', 'num_days_complete', 'bike_complete_flag',
+            'avg_comfort', 'comfort_bin',
+            'student', 'person_weight']
+bike_cols_per = [col for col in person.columns if 'bike' in col]
+
+# Merge bike trip info with person data
+person_btrips = pd.merge(
+    person[per_cols + bike_cols_per],
+    bike_counts,
+    on='person_id',
+    how='left',
+    validate='1:1'
+).fillna({'bike_trips': 0})
+
+# Merge with hh data
+hh_cols = ['hh_id', 'num_bicycle_adult', 'num_bicycle_child', 'income_broad', 'income_bin', 'income_num']
+person_btrips = pd.merge(
+    person_btrips,
+    hh[hh_cols],
+    on = 'hh_id',
+    how = 'left'
+)
+
+# Add dummy if person reported bike trip
+person_btrips['recorded_btrip'] = np.where(person_btrips['bike_trips'] > 0, 1, 0)
+
+# %% Merge bike trips with person info
+btrips_person = pd.merge(
+    bike_trips.drop(columns = ['hh_id']),
+    person[per_cols + bike_cols_per],
+    how = 'left',
+    on = 'person_id'
+)
+
+# Add hh data
+btrips_person = pd.merge(
+    btrips_person,
+    hh[hh_cols],
+    how = 'left',
+    on = 'hh_id'
+)
+
+# Add bike type to bike trip info
+ltrip_bike_ids = bike_trips['linked_trip_id'].to_list()
+subset = trips[trips['linked_trip_id'].isin(ltrip_bike_ids)] # bike type is unlinked trip table
+
+bike_modes = [2, 3, 4, 5, 69, 70, 82, 103, 300] # bike modes and hierarchy
+
+def get_highest_bike_mode(modes):
+    found_bikes = [m for m in modes if m in bike_modes]
+    if found_bikes:
+        return max(found_bikes)   
+    else:
+        return None 
+
+modes = subset.groupby('linked_trip_id')['mode_1'].agg(list).reset_index().rename(columns = {'mode_1':'mode_list'})
+modes['bike_mode'] = modes['mode_list'].apply(get_highest_bike_mode)
+
+# Add bike type
+btrips_person = pd.merge(
+    btrips_person,
+    modes[['linked_trip_id', 'bike_mode']],
+    how = 'left',
+    on = 'linked_trip_id',
+)
+
+ebikes = [70, 82] # ebike from bikeshare, ebike in household
+btrips_person['bike_type'] = np.where(btrips_person['bike_mode'].isin(ebikes), 'ebike', 'standard')
+
+# %% Export
+person_btrips.to_csv(f'{interim_dir}/person_btrips.csv', index=False)
+btrips_person.to_csv(f'{interim_dir}/btrips_person.csv', index=False)